Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1778 ATGGAGGGCAAAATCTTGGAGTGTCAGAATCAGGGGCAAGCTGTGGAAAATTTATCTGCAGGGCTTTCTAGTTTCTCCCTTAGCGACCAGATATGCAATTCCGGTTCTCCTCAGGATGATCAGGTGGGTGGTAGGAGGAGGAATTGCGATACTAAAGAGTATTTTGATTCCTTTTCCTCTGATAGTACTGGACGGTGTTCTACAAATGCTTCTAGATTATATCCTGAATTCCCCGAAAAACAATTGGAAAAACATAACGAAGATATGGAGTCTTCAGCTAATCTTCAGGGAAGGTATTTCTATTACGATGCTCCACTGCAGGAAGATACTGGAGTGTGGATACCAGTTTCAGTTCCACCTATGTTGGAAGATGATCATAAAGAGTGGGCCAAAGGTTTTCCATCAAACGGTGGCTATTTTCCTGATGATGACTTGGGGTGGAATCAATATGTAGGAGACGAAAGGGAATTGACTATGTGGGATGTGCTAGCAGAAATGTTACTTGTGGCTCGGGGAAAAGTGACTTCTTTGGCTTCAGGAGATCTTCATATGTGTAATTTTTCGTGGATATCCAGCCATGTACTAGAACAAGCTTGGAGAGAGATGGCACAAACTCTTACAGAGGCCAATTTTGGTAATGTGAGGGAACTATTAGAAGCTGATCCTCCAAAATGGTTAGCTGATAGTGCTGCTTCTTCTTGTATGCTTTGTGGTGTGAGGTTTCATCCCATCATGTGCTCTCGACATCACTGTCGGTTTTGTGGAGGAATATTTTGTGGTGAGTGCTCTAAAGGGCGGAGCTTGTTGCCATCAAAATTCCAAGTTTCTGACCCCCAAAGAGTATGTGATGTATGCTGTGTCCGACTTGAGTCTGTACAGCCTTATTTGATGGATCATGTAAGCAATGCTGCTCAGTTGCCAACCCATGACCTGACGGATCTGAGCACTTTGAGATCTTGGGTTAATTTTCCTTGGGGACAGTCCATGGAATATGAAATTTACAAGGCAACTAACACTATCAAGGCTTATAATCAGATTGGTTTTCTAAAGCCCGAGAAGTCAATTCCAGATGTCATTCTAAGAAAAGCAAAGGGCCTTGCAATTATCACTGTGGTTAAAGTAGGAGTGGTGGTCACGTATAACATTGGAACAGGACTTGTGGTCGCACGAAGGGAAGATGGTTCATGGTCTGCTCCATCTGCTGTGTCCACCTTTGGTGTAGGGTGGGGGGCTCAGGCTGGAGGAGAGTTGACAGACTTCATTATTGTCTTGAGAACAAATGATGCTGTCAAGACATTTAGTGGCAATATGCATATTTCACTTGGAGCTGGTTTGAGTGCTGCAGTAGGCGTTGTTGGTAGATCAGTTGAAGCTGATGTTCGAGCTGGTGATGGTGGTTATGCTGCTTGTTATACCTACAGCTGCAGTAAAGGTGCATTTGTTGGATGTTCACTTGAAGGGAGTATGGTAACTACTCGCACGCAAGAAAATTCCCGTTTCTATGGCAGCCAGTCTATAGCTGCAACAGACATACTTGACTCACTGCCTAGGCCACCTGCTGCTGCCATTCTCTACCGTGCACTTACTGATCTCTATTCCAAGCTTGATGGATGA 1614 0.443 MEGKILECQNQGQAVENLSAGLSSFSLSDQICNSGSPQDDQVGGRRRNCDTKEYFDSFSSDSTGRCSTNASRLYPEFPEKQLEKHNEDMESSANLQGRYFYYDAPLQEDTGVWIPVSVPPMLEDDHKEWAKGFPSNGGYFPDDDLGWNQYVGDERELTMWDVLAEMLLVARGKVTSLASGDLHMCNFSWISSHVLEQAWREMAQTLTEANFGNVRELLEADPPKWLADSAASSCMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPSKFQVSDPQRVCDVCCVRLESVQPYLMDHVSNAAQLPTHDLTDLSTLRSWVNFPWGQSMEYEIYKATNTIKAYNQIGFLKPEKSIPDVILRKAKGLAIITVVKVGVVVTYNIGTGLVVARREDGSWSAPSAVSTFGVGWGAQAGGELTDFIIVLRTNDAVKTFSGNMHISLGAGLSAAVGVVGRSVEADVRAGDGGYAACYTYSCSKGAFVGCSLEGSMVTTRTQENSRFYGSQSIAATDILDSLPRPPAAAILYRALTDLYSKLDG* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1778 537 PANTHER SH3YL1 PROTEIN 80 536 - -
Pvu6g1778 537 SUPERFAMILY FYVE/PHD zinc finger 223 302 IPR011011 -
Pvu6g1778 537 SMART fyve_4 220 291 IPR000306 GO:0046872
Pvu6g1778 537 CDD SYLF_FYVE 331 531 - -
Pvu6g1778 537 Pfam Las17-binding protein actin regulator 406 529 IPR007461 -
Pvu6g1778 537 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 228 290 IPR017455 -
Pvu6g1778 537 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 214 300 IPR013083 -
Pvu6g1778 537 PANTHER RING/FYVE/PHD-TYPE ZINC FINGER FAMILY PROTEIN 80 536 - -
Pvu6g1778 537 Pfam FYVE zinc finger 224 289 IPR000306 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1778 Pvu-Chr6 28218706 28222554 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1778 225 308 EF-hand Containing Proteins AT3G14270 33.708 6.07e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1778 K20523 - gmx:100813648 953.355
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1778 6 28218706 28222554 Pvu6g1778 6 28218706 28222554 ECH