Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1716 ATGTCTCTCCCCACCAAACGGTCGGGCACCGCTGGTTCCTCCCCGTCGCCGCCACCCCCTATGAAAAAGGCCAAGTCGCTTCTCCTCCGCGCCCCCTCCGACGACGCCGTTTTGGACTCTTCCCCCATGCCTCTCGACGACGATCTCCCCAATGCCCGCGCCGCCAATCTCTCCCGCAAGAAAGCCACCCCGCCCCAGCCCGCCAAGAAGCTCCTCATCAAGCTCCACAAAGCTAAGCCAACATTGCCCACGAATTTTGAGGAGGATACATGGGCAAAACTAAAGTCTGCCATTTGTGCTATATTTTTGAAGCAACCAAACTCTTGTGACTTGGAGAAGCTTTATCAGGCTGTGAATGATCTATGCCTTTATAAAATGGGTGGAAATCTTTATCAAAGAATAGAAAAGGAGTGTGAATCACATATATCTGCAGCGCTGCAGTCTTTGGTTGGCCAAAGCCCAGATTTGGTTGTTTTCCTGTCTCTAGTTGAGAGATGTTGGCAGGATCTTTGTGACCAAATGTTGATGATTCGTGGTATAGCCTTGTATCTGGATAGGACGTATGTGAAACAAACGGCAAATGTCCGGTCATTATGGGACATGGGCTTACAACTTTTCCGCAAACATCTTTCATTGTCTCCTGAAGTAGAACACAAAACTGTTACTGGTCTTCTTCGAATGATTGAAAGTGAAAGAAAAGGTGAAGCAGTGGATAGAACCCTTCTAAACCATCTTTTAAAGATGTTTACTGCTCTGGGAATTTATGCAGAAAGCTTTGAGAAGCCATTCCTTGAATGCACATCTGAATTTTATGCTGCTGAAGGTGTAAAATACATGCAGCAATCAGATGTTCCAGATTATTTGAAGCATGTGGAGATAAGATTGCAAGAAGAACATGAAAGATGTTTGATCTACTTGGATGCAAGTACTAGGAAGCCATTGATAGCAACAGCAGAAAAACAACTTCTTGAACGTCATATACCTGCCATTCTTGATAAGGGCTTCGCAATGCTTATGGATGGGAATCGTATTGAAGACCTTCAGAGAATGTATTCACTCTTTTTAAGGGTCAATGCCCTTGAGTCACTGAGGCAGGCAATTAGTTCATACATCAGGAGAACTGGTCAGGGCATTGTTATGGACGAGGAGAAAGATAAAGATATGGTTTCATCCCTTTTGGAATTTAAGGCTTCTCTTGACACAACATGGGAAGAAAGTTTTTCCAAGAATGAAGCATTCTGTAACACCATCAAAGATTCATTTGAGTATCTCATCAATCTTCGTCAGAACCGACCTGCCGAGTTGATTGCCAAGTTTTTAGATGAGAAACTCCGTGCAGGTAACAAGGGAACTTCAGAAGAAGAGTTAGAGGGCACACTTGATAAAGTCCTGGTTTTATTCAGGTTCATACAGGGCAAGGATGTGTTTGAGGCATTTTATAAGAAAGATCTTGCAAAAAGACTGCTGTTAGGAAAGAGTGCTTCTATTGATGCCGAGAAATCTATGATCTCCAAGTTGAAGACTGAGTGTGGCAGCCAGTTCACTAACAAACTAGAAGGGATGTTTAAGGACATTGAATTATCAAAAGAAATAAACGAGTCCTTCAAACAGTCATCCCAGGCTAGGACAAAACTCCCATCAGGGATTGAAATGAGTGTTCATGTCTTGACAACTGGGTACTGGCCAACATATCCACCCATGGATGTTAGACTTCCTCATGAATTGAACGTTTACCAGGATATTTTCAAAGAGTTCTATCTAAGCAAATACAGTGGAAGACGCCTGATGTGGCAAAATTCATTAGGTCACTGTGTCTTAAAGGCAGAGTTTCCTAAAGGGAAAAAAGAGCTGGCTGTCTCCCTATTTCAGACTGTTGTTCTGATGTTATTCAATGATGCTGAGAAACTAAGTTTTCAAGATATAAAGGACTCTACTAGTATTGAGGACAAGGAACTTAGAAGGACTCTGCAATCACTTGCCTGTGGGAAAGTTCGTGTCCTACAAAAGTTGCCAAAGGGTAGAGATGTGGAGGATGATGACTCATTTGTTTTTAATGAAGGATTTGCAGCTCCTCTGTACCGTATAAAGGTGAATGCAATTCAGTTGAAGGAGACGGTGGAGGAGAACACAAGCACCACTGAAAGAGTTTTCCAAGACCGTCAGTATCAGGTTGATGCTGCTATTGTGAGGATAATGAAGACTAGGAAAGTGCTTAGTCATACCCTTCTTATTACCGAACTCTTTCAACAGCTAAAATTTCCAATAAAACCAGCGGACTTGAAGAAAAGGATCGAAAGCCTGATTGACAGGGAGTATCTGGAGAGGGACAAGAACAATCCTCAAATATACAATTATCTGGCATAG 2364 0.4272 MSLPTKRSGTAGSSPSPPPPMKKAKSLLLRAPSDDAVLDSSPMPLDDDLPNARAANLSRKKATPPQPAKKLLIKLHKAKPTLPTNFEEDTWAKLKSAICAIFLKQPNSCDLEKLYQAVNDLCLYKMGGNLYQRIEKECESHISAALQSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTANVRSLWDMGLQLFRKHLSLSPEVEHKTVTGLLRMIESERKGEAVDRTLLNHLLKMFTALGIYAESFEKPFLECTSEFYAAEGVKYMQQSDVPDYLKHVEIRLQEEHERCLIYLDASTRKPLIATAEKQLLERHIPAILDKGFAMLMDGNRIEDLQRMYSLFLRVNALESLRQAISSYIRRTGQGIVMDEEKDKDMVSSLLEFKASLDTTWEESFSKNEAFCNTIKDSFEYLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVVLMLFNDAEKLSFQDIKDSTSIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFAAPLYRIKVNAIQLKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA* 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1716 787 Gene3D Cullin Repeats 78 209 - -
Pvu6g1716 787 SMART Cullin_Nedd8_2 716 781 IPR019559 -
Pvu6g1716 787 Gene3D - 714 787 IPR036388 -
Pvu6g1716 787 PANTHER CULLIN 49 787 IPR045093 -
Pvu6g1716 787 ProSiteProfiles Cullin family profile. 431 660 IPR016158 -
Pvu6g1716 787 Gene3D Cullin Repeats 328 429 - -
Pvu6g1716 787 SUPERFAMILY Cullin repeat-like 85 427 IPR016159 -
Pvu6g1716 787 MobiDBLite consensus disorder prediction 32 51 - -
Pvu6g1716 787 Gene3D Cullin Repeats 213 326 - -
Pvu6g1716 787 SMART cul_2 461 610 IPR016158 -
Pvu6g1716 787 MobiDBLite consensus disorder prediction 1 26 - -
Pvu6g1716 787 Gene3D Cullin; Chain C, Domain 2 546 701 - -
Pvu6g1716 787 SUPERFAMILY "Winged helix" DNA-binding domain 699 787 IPR036390 -
Pvu6g1716 787 Pfam Cullin family 91 688 IPR001373 GO:0006511|GO:0031625
Pvu6g1716 787 ProSitePatterns Cullin family signature. 760 787 IPR016157 GO:0006511|GO:0031461|GO:0031625
Pvu6g1716 787 Pfam Cullin protein neddylation domain 719 779 IPR019559 -
Pvu6g1716 787 Gene3D Cullin Repeats 430 541 - -
Pvu6g1716 787 PANTHER CULLIN-4A 49 787 - -
Pvu6g1716 787 SUPERFAMILY Cullin homology domain 428 698 IPR036317 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1716 Pvu-Chr6 27627831 27642579 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1716 K10609 - gmx:100805491 1480.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1716 6 27627831 27642579 Pvu6g1716 6 27627831 27642579 ECH
Pvu6g1716 6 27627831 27642579 Pvu3g1074 3 25399073 25406289 PCT