Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1417 ATGGCGCAGTGCTTTGATGGATTAAAGCAGTTGTATACTGCTGTGATAAACTTTTGTAATGCTGATTTGATCCAGCAGCAGCCTAGAGGCTTACAACATCCAGAAGCACTTGCTAGAGAAACAGTGTTTAGTGTAAGTGAGATTGAAGCACTGTATGAACTATTCAAGAAGATCAGCAGTGCAGTAATTGATGATGGACTAATTACTAAGGATGAATTTCAGTTGGCCTTATTCAAGACAACAAAGAAAGAGAGCTTATTTGCGGATAGGGTGTTTGACTTGTTTGACACAAAGCACCATGGGATACTTGATTTCAAAGAGTTTGCACTTGCTCTCTCTGTCTTTCATCCCAATGCATCAGTTAATGATAAGATTGAGTTTTCATTCCAATTGTATGATCTCAAACACCAAGGATTTATTCAGAGACAGGAGTTAAAACAAATGGTGGTGGCTACTCTATCTGAAGCTGGCATGAATCTTGCAGATGATGTGATTGAAAGCATTATTGACAAGACATTTGAGGAAGCTGATACAAAACATGATGGGAAGATTGACAAGGAAGAGTGGCGAAACCTTGTCTTGCGACATCCTTCCCTTCTTAGAAATATGACTCTTCAGTATCTTAAAGATATTACAACTACTTTTCCCAGTTTTGTATTTCACTCACAAGTTGATGATGTTTGA 684 0.3816 MAQCFDGLKQLYTAVINFCNADLIQQQPRGLQHPEALARETVFSVSEIEALYELFKKISSAVIDDGLITKDEFQLALFKTTKKESLFADRVFDLFDTKHHGILDFKEFALALSVFHPNASVNDKIEFSFQLYDLKHQGFIQRQELKQMVVATLSEAGMNLADDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHPSLLRNMTLQYLKDITTTFPSFVFHSQVDDV* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1417 227 SUPERFAMILY EF-hand 35 219 IPR011992 -
Pvu6g1417 227 ProSiteProfiles EF-hand calcium-binding domain profile. 83 118 IPR002048 GO:0005509
Pvu6g1417 227 Pfam EF-hand domain pair 65 108 IPR002048 GO:0005509
Pvu6g1417 227 SMART efh_1 168 196 IPR002048 GO:0005509
Pvu6g1417 227 SMART efh_1 87 115 IPR002048 GO:0005509
Pvu6g1417 227 SMART efh_1 124 152 IPR002048 GO:0005509
Pvu6g1417 227 ProSiteProfiles EF-hand calcium-binding domain profile. 120 155 IPR002048 GO:0005509
Pvu6g1417 227 PANTHER CALCINEURIN B-LIKE PROTEIN 3 ISOFORM X2 1 226 - -
Pvu6g1417 227 PANTHER CALCINEURIN B 1 226 IPR045198 GO:0005509|GO:0019722|GO:0019900
Pvu6g1417 227 Pfam EF-hand domain pair 123 191 IPR002048 GO:0005509
Pvu6g1417 227 ProSiteProfiles EF-hand calcium-binding domain profile. 164 199 IPR002048 GO:0005509
Pvu6g1417 227 PRINTS Recoverin family signature 91 112 - -
Pvu6g1417 227 PRINTS Recoverin family signature 138 156 - -
Pvu6g1417 227 PRINTS Recoverin family signature 184 204 - -
Pvu6g1417 227 Gene3D - 33 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1417 Pvu-Chr6 25018836 25023773 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1417 1 227 EF-hand Containing Proteins AT5G55990 80.617 1.04e-131 368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1417 K06268 - gmx:100808191 404.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1417 6 25018836 25023773 Pvu6g1417 6 25018836 25023773 ECH
Pvu3g0919 3 15697770 15704517 Pvu6g1417 6 25018836 25023773 PCT