Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1278 ATGGGTTTGTCTTTTGGCAAGATTTTCTCTCGTCTATGCGCTAAGAAGGAGATGCGAATTCTCATGGTTGGTCTTGATGCTGCTGGTAAAACCACAATATTGTATAAACTGAAGTTAGGGGAGATTGTCACCACCATTCCTACTATTGGATTTAACGTGGAGACTGTGGAGTATAAGAACATTAGCTTCACTGTGTGGGATGTTGGTGGTCAAGATAAGATTCGACCCTTGTGGAGACACTACTTCCAAAACACACAAGGGCTTATTTTTGTGGTAGACAGCAATGATCGTGATCGTGTTGTTGAGGCTAAAGATGAGTTGCACAGGATGCTGAATGAGGATGAATTAAGAGATGCTGTATTGCTTGTTTTTGCAAACAAGCAAGATCTTCCTAATGCAATGAACGCTGCTGAAATCACTGATAGGCTTGGTCTAAACTCTCTGCGCCAACGCCACTGGTATATCCAAAGTACATGTGCCACATCTGGTGAAGGTTTATATGAAGGACTAGACTGGCTTTCGAACAACATTTCAAGCAAGACTTCCTTTAAATAG 555 0.418 MGLSFGKIFSRLCAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEAKDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDRLGLNSLRQRHWYIQSTCATSGEGLYEGLDWLSNNISSKTSFK* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1278 184 ProSiteProfiles small GTPase Arf family profile. 11 177 - -
Pvu6g1278 184 Gene3D - 6 183 IPR027417 -
Pvu6g1278 184 PANTHER ADP RIBOSYLATION FACTOR-RELATED 1 180 IPR024156 GO:0005525
Pvu6g1278 184 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 178 IPR027417 -
Pvu6g1278 184 CDD Arf1_5_like 18 176 IPR045872 GO:0003924
Pvu6g1278 184 PRINTS GTP-binding SAR1 protein signature 19 42 IPR006689 GO:0003924|GO:0005525
Pvu6g1278 184 PRINTS GTP-binding SAR1 protein signature 47 71 IPR006689 GO:0003924|GO:0005525
Pvu6g1278 184 PRINTS GTP-binding SAR1 protein signature 74 99 IPR006689 GO:0003924|GO:0005525
Pvu6g1278 184 PRINTS GTP-binding SAR1 protein signature 119 140 IPR006689 GO:0003924|GO:0005525
Pvu6g1278 184 SMART rab_sub_5 18 151 - -
Pvu6g1278 184 Pfam ADP-ribosylation factor family 6 177 IPR006689 GO:0003924|GO:0005525
Pvu6g1278 184 PANTHER ADP-RIBOSYLATION FACTOR 1 1 180 - -
Pvu6g1278 184 SMART arf_sub_2 1 181 - -
Pvu6g1278 184 SMART sar_sub_1 1 177 IPR006689 GO:0003924|GO:0005525
Pvu6g1278 184 TIGRFAM small_GTP: small GTP-binding protein domain 16 143 IPR005225 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1278 Pvu-Chr6 23768827 23771425 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1278 K07937 - gmx:100789436 364.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1278 6 23768827 23771425 Pvu6g1278 6 23768827 23771425 ECH
Pvu6g1278 6 23768827 23771425 Pvu7g2177 7 45031087 45034916 ECH