Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1254 ATGTGGTGGTGGTACACGTCAAGTTTCCGGTGGCCGGAGCTAAACCTGTCGCTTCTGTGGTCGAATTTCCGGTGGCCGGCGTTGGACTTGTCATATTGGAGCGTAGAAAGTGTGATTCAATGGAACTTGTCGTTGGTTGATGACGTGGTATGGGCCTTGATTACGGGCCTTGAGTCCATAGCTTTGGTCGCCTTGCTCTGCTACTTCTTCATCTGTTGTGGTTTGAAGACTGAGAGTGCACAGCAAAAGAAAAGCAAGAAGACAGATAGAAGAAGCAATTTCGGAAAGAGGTTTTTGTCATCTTGCATGGAATTTCAATCTCCAACTTCTCGCCCTACCCGGAGTGATGTCATTTTGAACCACCATCCACCATTTCCGATCATTCACCGGTTTCTGTTGCCGCCGCCGCCGCTGCTGCCATCACCCTCCACGGTGCTGCTTCCGATACCTTTCAACCAGTCACTTTTCTTTACGATGGATAATCAAAGGTCCATCTCTCTGCTTCAGTTCATGGTTGATGAAGGACTTCTTCCGTCGGCAGCAGAGGAAGATAAACGAAAAAATGTTATTCGGAAGCTTAAACAGGTAGTCTCATCGTGGGTTAAGAAGGTTGCATGCCTGCATCAACTACCAGAGCACCAAATTGCTGTCACATCTGCCACAGTAATAACTTATGGATCTTATGGCCTCGGAGTTCACAACTCAGGGTCTGATATTGATGCTTTGTGTGTTGCTCCTTTCTTTGCCTCAATTGCAGAAGACTTTTTTGTTGTGTTGCACGACATGCTTAAAAGAAGACCTGAAGTATCATATATTCACTGTGTCAAGAGTGCAAAAGTCCCTTTAATGCGATTTAAATTTGAAGGAGTTTCCATTGATCTTCCATATGCTCGGCTTAATGTACTATATGTTCCTGAGAACGTTGACATATTAAATCCATTTTTCACGAGGAATATTGATGATACTAGCTGGAAAAGTTTGTCTGGGGTACGAGCAAATAAATACATTCTCCATCTAGTTCCTAATATAGAGAAATTTCAATGCATGCTACGATGTCTTAAACTGTGGGCAAAAAGGCGAGGAGTTTATGGAACTTTACTTGGTTATTTGGGAGGAGTTCATATGACAGTTCTTGCAGCATATGTTTTGCTAAGACACCCTGATGCCACCTTAAATGCTCTAATTATGAACTTTTTTCAAACATTTGCATTTTGGCCCTGGCCTACTCCAGTGATGTTGCAGGAAGGAATGTTTACAGTTATAGATGCGATAGAAACACGGTCCTTCATGCCTATATTTCTGCCATCTAGCCGTTATGAGTATTGTCATACAAATATTACTAAAAGCACTTTCTTTCGGATTAGGAGTGAGTTTCTTCGTGGACATGATATGACAAAGGATATTTTGAAGCCAGATTTCCTTTGGGATAATGTATTCGAGCCTTTTCCATACTCAAAAAGATACTCCCAATTTGTCAAAATTTATCTCTCTTCTCCTGATCATTATGCACTGGCAGAATGGGTTGGTTGGGTAAAGTCACGCTTTCGAGGTCTTCTTGTGCATCTGGAGGTTACTCAAGGATTTTGTGACCCTAACCCTACAGAATATGTTGATAGGGAGAAAACAGAGCCAAATGTAGTTTTCTACTGGGGTTTGCAACCTAATAAGAAAAATTTCCTGGACATTGATTCGGTAAAGGGGGAGTTCATGAAGATTATAAAGAATGGCTATGAAGGTTCTCCTGGGAAAATGGAGATGTCCATCCTGTTAGGTTCTCAATTGCCTAATTGA 1791 0.421 MWWWYTSSFRWPELNLSLLWSNFRWPALDLSYWSVESVIQWNLSLVDDVVWALITGLESIALVALLCYFFICCGLKTESAQQKKSKKTDRRSNFGKRFLSSCMEFQSPTSRPTRSDVILNHHPPFPIIHRFLLPPPPLLPSPSTVLLPIPFNQSLFFTMDNQRSISLLQFMVDEGLLPSAAEEDKRKNVIRKLKQVVSSWVKKVACLHQLPEHQIAVTSATVITYGSYGLGVHNSGSDIDALCVAPFFASIAEDFFVVLHDMLKRRPEVSYIHCVKSAKVPLMRFKFEGVSIDLPYARLNVLYVPENVDILNPFFTRNIDDTSWKSLSGVRANKYILHLVPNIEKFQCMLRCLKLWAKRRGVYGTLLGYLGGVHMTVLAAYVLLRHPDATLNALIMNFFQTFAFWPWPTPVMLQEGMFTVIDAIETRSFMPIFLPSSRYEYCHTNITKSTFFRIRSEFLRGHDMTKDILKPDFLWDNVFEPFPYSKRYSQFVKIYLSSPDHYALAEWVGWVKSRFRGLLVHLEVTQGFCDPNPTEYVDREKTEPNVVFYWGLQPNKKNFLDIDSVKGEFMKIIKNGYEGSPGKMEMSILLGSQLPN* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1254 596 Gene3D Poly(A) polymerase predicted RNA binding domain 484 590 - -
Pvu6g1254 596 Pfam Nucleotidyltransferase domain 219 280 IPR002934 GO:0016779
Pvu6g1254 596 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 482 594 IPR011068 GO:0003723|GO:0016779|GO:0031123
Pvu6g1254 596 Gene3D Beta Polymerase, domain 2 178 334 IPR043519 -
Pvu6g1254 596 PANTHER NUCLEAR POLY(A) POLYMERASE 3 150 596 - -
Pvu6g1254 596 CDD NT_PAP_TUTase 185 300 - -
Pvu6g1254 596 SUPERFAMILY Nucleotidyltransferase 150 337 IPR043519 -
Pvu6g1254 596 PANTHER POLY A POLYMERASE 150 596 - -
Pvu6g1254 596 SUPERFAMILY PAP/OAS1 substrate-binding domain 341 481 - -
Pvu6g1254 596 Pfam Poly(A) polymerase central domain 159 481 IPR007012 GO:0004652|GO:0043631
Pvu6g1254 596 Gene3D - 158 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1254 Pvu-Chr6 23499953 23509477 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1254 K14376 - qsu:112002927 617.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1254 6 23499953 23509477 Pvu6g1254 6 23499953 23509477 ECH