Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1235 ATGGCTCTCAGATATTTCTGCACTACAAATATTTCAACCAGACAGCATGATTTTTCTGCTAAAATTCTTGTTCCATCTTCTCTCTCTTTAACAAACTCGCGCATGCACAGTTCCACCCCAGAGACAAACACCAAGACCAAGTCTACTGCTGACAACTTGAAGAGCCTCGTCAACACCCTCGTGCTTCCTTCCATTTCATCTTCTCCACTTCACTCTCTCCACAGAGGCAACTGGGTCAAGCTCATTTGTGGTGCAAGCTTTGAGGATGTTGTTGATATCAGAAATCTCAGCCTGGTTTACACTCTTGCTGGAGTTGACTGCATTGACTGTGCTGCTGATGCATCAGTTGTTAGTGCTGTGAATGAAGGAATTGAAGCTGCAAGAGATATCGTATGCCTTAGAAAGCCGTGGGTGATGATCAGTGTCAATGATGATAAAGATCTTCATTTTCGGAAGGCCGAATTTGATCCAGAGGACTGTCCAGCAGACTGTTCACGGCCTTGTGAAAATGTATGCCCTGCTAGTGCAATATCATTCCTTGGGAAATCTTCGGGAATTTCGTATAATACTGAAGCACCAAGTGTACTCAAGGATGGAGTCATAACAGAACGCTGCTATGGCTGTGGTCGCTGTCTTCCAGTTTGCCCCTATGATAAAATAAGAGAGGTAACATATGTAAGAGATGCTATTGCAACTGCTGATCTCATCAAGAAAAATGACGTTGATGCTATGGAGATACATACAAGTGGGAGACAGAGTACATTGTTCGAACAACTCTGGAGTGCTCTGGGAGATTCAGTAGAAAATTTGAAGCTTATAGCTGTTAGCTTACCTAATGTTGGTGATTCAACAATATCCTCCATGAACTATATGTTCTCTATTATGAAACCCAATCTTCAAAGCTTCAACTTATGGCAGTTAGATGGTCGTCCTATGAGTGGAGATATTGGGAGAGGAGCAACTAAGGAATCAATTGCCTTTGCTGTTCAACTGGCTAAAGAAAAAGAAAGACCTCCTGGTTTTCTTCAACTTGCTGGTGGAACCAATGCTCACACAATTGAAGGGTTGAAAAAAGAGGGACTCTTTCAAACAACTATTAGTGAATACCTGCATGATGACAAATCAGCAATAAACTCATCTGATTCACCACATGCTTTAATTAGCGGCATTGCATATGGTGGCTACGCACGGAAGATTGTTGGTAGAGTATTGAGATCAATGCAATCACAACATGGTGGGGCTGCTTCAATTGAGGATCATTCTGAGTATCTCTTGATGGCTCTTAAGGAAGCACTTGCTTTGGTGGGGCCTATTAAATGTTCATGA 1326 0.4231 MALRYFCTTNISTRQHDFSAKILVPSSLSLTNSRMHSSTPETNTKTKSTADNLKSLVNTLVLPSISSSPLHSLHRGNWVKLICGASFEDVVDIRNLSLVYTLAGVDCIDCAADASVVSAVNEGIEAARDIVCLRKPWVMISVNDDKDLHFRKAEFDPEDCPADCSRPCENVCPASAISFLGKSSGISYNTEAPSVLKDGVITERCYGCGRCLPVCPYDKIREVTYVRDAIATADLIKKNDVDAMEIHTSGRQSTLFEQLWSALGDSVENLKLIAVSLPNVGDSTISSMNYMFSIMKPNLQSFNLWQLDGRPMSGDIGRGATKESIAFAVQLAKEKERPPGFLQLAGGTNAHTIEGLKKEGLFQTTISEYLHDDKSAINSSDSPHALISGIAYGGYARKIVGRVLRSMQSQHGGAASIEDHSEYLLMALKEALALVGPIKCS* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1235 441 Gene3D - 157 239 - -
Pvu6g1235 441 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 196 225 IPR017896 -
Pvu6g1235 441 PANTHER ATP-BINDING CASSETTE SUB-FAMILY E MEMBER 1 62 436 - -
Pvu6g1235 441 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 151 182 IPR017896 -
Pvu6g1235 441 Pfam Iron-Sulfur binding protein C terminal 235 436 IPR021039 -
Pvu6g1235 441 SUPERFAMILY 4Fe-4S ferredoxins 131 223 - -
Pvu6g1235 441 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 205 216 IPR017900 -
Pvu6g1235 441 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 62 436 IPR013283 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1235 - - var:108342585 741.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1235 6 23275717 23280390 Pvu6g1235 6 23275717 23280390 ECH