Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1229 ATGGCCGACAAGTACAACCTCAAGAACCCCGCCGTCAAGCGGATCCTCCAGGAGGTCAAGGAGATGCACTCCAACCCCTCCGACGATTTCATGAGCCTCCCTCTCGAGGAAAATATATTTGAGTGGCAATTTGCGATTAGAGGGCCTCGTGATACTGAATTTGAGGGTGGTATTTATCATGGACGGATCCAGCTTCCTTCAGAGTATCCATTCAAACCTCCTTCGTTTATGTTGTTGACACCAAATGGTCGTTTCGAGACTCAAACCAAGATTTGCTTGAGCATTTCAAATCATCACCCTGAGCATTGGCAACCATCATGGAGCGTGAGGACTGCTCTAGTTGCACTGATTGCTTTCATGCCAACGAACCCAAATGGTGCATTGGGATCTTTAGACTACAAGAAAGAAGAGAGGCGTACCCTGGCTGTAAAATCTCGTGAAGCTCCTCCTAAATTTGGAACTCCTGAACGTCAAAAGCTGATCGATGAGATACACGAGTACATGCTAAGCAAGGCACCCCCAGTTCCTCAACCAAGCGCCACAGAGGCTTCCGAAGAGCACCCCAGAAATGAGGAAGCTGAGGCCCTGGTTGATTCACCTAATCGTGAGTCTTTACCAGCTGGAGAAAGGATTCCAGATCAAGAAGGTGATGGAATTCTTGAAGAACAAGAAGTTCTTGCAAATCCTAACCCTGCTGGAGTTGAAGTTTCGGGGGAGATTCAATCAAATGTTTCAAGGAATGAGCTGCCCCAAAAGTCAGATACAACTGCAAGGGTTCACAATACCAAGCCAGAGACAAGGGTCCAGAAACCTGATGATAGGCTGTTCACATTGGCAGCTATCGGACTCGTTATTGCTATTGTAGTCCTTTTGCTCAAAAAGTTCATCAAGTCTACCGAACATGGGGCACTTTTCTCCAATGGATCTTGA 930 0.4688 MADKYNLKNPAVKRILQEVKEMHSNPSDDFMSLPLEENIFEWQFAIRGPRDTEFEGGIYHGRIQLPSEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRTLAVKSREAPPKFGTPERQKLIDEIHEYMLSKAPPVPQPSATEASEEHPRNEEAEALVDSPNRESLPAGERIPDQEGDGILEEQEVLANPNPAGVEVSGEIQSNVSRNELPQKSDTTARVHNTKPETRVQKPDDRLFTLAAIGLVIAIVVLLLKKFIKSTEHGALFSNGS* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1229 309 PANTHER BNAC01G21910D PROTEIN 6 307 - -
Pvu6g1229 309 Pfam Ubiquitin-conjugating enzyme 14 125 IPR000608 -
Pvu6g1229 309 MobiDBLite consensus disorder prediction 232 266 - -
Pvu6g1229 309 SMART ubc_7 13 173 - -
Pvu6g1229 309 MobiDBLite consensus disorder prediction 184 198 - -
Pvu6g1229 309 MobiDBLite consensus disorder prediction 235 257 - -
Pvu6g1229 309 SUPERFAMILY UBC-like 11 133 IPR016135 -
Pvu6g1229 309 Gene3D Ubiquitin Conjugating Enzyme 2 188 IPR016135 -
Pvu6g1229 309 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 10 165 IPR000608 -
Pvu6g1229 309 MobiDBLite consensus disorder prediction 171 214 - -
Pvu6g1229 309 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 6 307 - -
Pvu6g1229 309 CDD UBCc 12 127 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1229 Pvu-Chr6 23219720 23222794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1229 1 307 Miscellaneous Gene Families AT3G17000 63.608 4.92e-132 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1229 K10578 - gmx:100798396 532.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1229 6 23219720 23222794 Pvu6g1229 6 23219720 23222794 ECH
Pvu3g1181 3 28488565 28490763 Pvu6g1229 6 23219720 23222794 PCT