Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1162 ATGGCTTCGGAGACAAAGATCGTGAATCTGACTGAGGAACCCAACCTAGCCAGGGAAGGTGTTAAGCCTCCCTCCTATGCTTTTACGACCATCTGCAAGTCCCTCGTCGCCGGTGGAGTCGCCGGAGGAGTATCACGAACGGCAGTTGCTCCACTGGAAAGGTTGAAGATTTTGCTACAGGTTCAGAATCCACACAATATAAAGTACAATGGAACAATTCAAGGTCTTAAATATATATGGAGAACTGAGGGTTTTCGTGGGCTATTCAAAGGGAATGGTACTAATTGTGCTCGAATAGTCCCGAATTCTGCGGTGAAGTTCTTCAGTTATGAGCAAGCTTCCAAGGGTATACTACAACTGTATCAGAAGCAAACTGGAAACGAGGATGCTCAGCTGACTCCTGTTTTACGTCTTGGGGCTGGAGCTTGTGCGGGAATAATTGCCATGTCTGCAACTTATCCAATGGACATGGTTCGAGGCAGAATAACTGTACAGACAGAGAAGTCCCCTTACCAGTACAGAGGAATGTTTCATGCTCTGTCAACTGTACTCAAGGAAGAAGGTCCACGTGCTTTATACAAGGGTTGGCTTCCTTCAGTCATTGGAGTTATTCCTTATGTGGGTCTCAACTTTGCTGTGTATGAGTCTTTGAAAGATTGGTTAGTTAAATCCAATCCATTTGGTATAGTTCAAGATTCTGAGCTGAGTGTGACAACTCGCCTGGCTTGTGGTGCTGCAGCTGGAACTATGGGACAAACCGTTGCTTACCCTCTTGATGTCATTCGACGAAGAATGCAGATGGTGGGTTGGAACCACGCTGCTTCTGTCATAGCTGGTGATGGAAGAGGGAAGGTGCCGCTTGAATACAGTGGCATGATTGATGCTTTTAGTAAAACTGTTCGGTATGAGGGATTTGGTGCATTATACAAGGGTCTGGTGCCGAATTCTGTAAAGGTGGTCCCATCCATAGCAATTGCGTTTGTAACGTATGAGGTGGTGAAGGACATTTTAGGTGTGGAGATCAGAATATCAGACTGA 1038 0.4586 MASETKIVNLTEEPNLAREGVKPPSYAFTTICKSLVAGGVAGGVSRTAVAPLERLKILLQVQNPHNIKYNGTIQGLKYIWRTEGFRGLFKGNGTNCARIVPNSAVKFFSYEQASKGILQLYQKQTGNEDAQLTPVLRLGAGACAGIIAMSATYPMDMVRGRITVQTEKSPYQYRGMFHALSTVLKEEGPRALYKGWLPSVIGVIPYVGLNFAVYESLKDWLVKSNPFGIVQDSELSVTTRLACGAAAGTMGQTVAYPLDVIRRRMQMVGWNHAASVIAGDGRGKVPLEYSGMIDAFSKTVRYEGFGALYKGLVPNSVKVVPSIAIAFVTYEVVKDILGVEIRISD* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1162 345 ProSiteProfiles Solute carrier (Solcar) repeat profile. 132 220 IPR018108 -
Pvu6g1162 345 Gene3D Mitochondrial carrier domain 27 339 IPR023395 -
Pvu6g1162 345 PANTHER BNAA09G39370D PROTEIN 4 340 - -
Pvu6g1162 345 Pfam Mitochondrial carrier protein 132 224 IPR018108 -
Pvu6g1162 345 Pfam Mitochondrial carrier protein 31 116 IPR018108 -
Pvu6g1162 345 Pfam Mitochondrial carrier protein 234 337 IPR018108 -
Pvu6g1162 345 ProSiteProfiles Solute carrier (Solcar) repeat profile. 29 116 IPR018108 -
Pvu6g1162 345 PRINTS Mitochondrial carrier protein signature 34 47 IPR002067 GO:0055085
Pvu6g1162 345 PRINTS Mitochondrial carrier protein signature 47 61 IPR002067 GO:0055085
Pvu6g1162 345 PRINTS Mitochondrial carrier protein signature 91 111 IPR002067 GO:0055085
Pvu6g1162 345 PRINTS Mitochondrial carrier protein signature 147 165 IPR002067 GO:0055085
Pvu6g1162 345 PRINTS Mitochondrial carrier protein signature 193 211 IPR002067 GO:0055085
Pvu6g1162 345 PRINTS Mitochondrial carrier protein signature 244 266 IPR002067 GO:0055085
Pvu6g1162 345 ProSiteProfiles Solute carrier (Solcar) repeat profile. 235 336 IPR018108 -
Pvu6g1162 345 PANTHER SOLUTE CARRIER FAMILY 25 4 340 - -
Pvu6g1162 345 SUPERFAMILY Mitochondrial carrier 31 332 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1162 Pvu-Chr6 22651330 22656397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1162 35 340 EF-hand Containing Proteins AT5G51050 38.762 1.55e-66 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1162 K14684 - gmx:100777048 652.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1162 6 22651330 22656397 Pvu10g1162 10 37444871 37449554 PCT