Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0607 ATGAAGCACAAACTTCCCACTCCGTCATTATCACGTGCGGTCGCACGTGCCCTATGCCCCGCCACCACCACGCAATGTGATTCAGCGTTTCCTTCGAAGACGGTCACCACCGCGAACTTCGAACCGTCGCTGGCGGAGCTCCGGCGCCACGTCCGGTCGTCGGACTTCGTGGCCATCGACCTCGAGATGAGCGGCATCACCAGCGCTCCCTGGCGCGAGTCACTCGAGTTCGACCGCTCCGACGTGCGCTACCTCAAGGTCCGAGACTCCGCCACCAAGTTCGCCGTCGTTCAATTTGGCGTTTGCCCCTTCCGTTGGGATTCCTCTAACAACTCCTTCGTCGCGTATCCGCACAGTTTCTATGTTTTTCCTCGACAGGAGCATGCAGGTCTGGGTCCGTGCGATGAATTTCTCTGGCAGACCACTTCGATGGATTTCTTGGCTAAATACCAGTTTGATTTTAATGCTTGCATACACGAAGGAATATCTTATTTATCCAGAGAACAAGAAAGGAAAGCATTAAGGAGTTTGAATTCTACGTATGATAGTGAGTGGTCTGACATTTGTAAATTAAAAGATGTTAGGGACATGCCATTGCTCAGTGCAGCAGACATTTTGTTTACTGCACGAATGAAAAACAAATTCCGTGAATGGCGTGATGGGTTATTACATGAGCAAAATCTAGAAGACCAAATTCAAGGAGATACTGGAGACTCAAAATTTCAAGAGATGTTTTTTGAGATGCATCCTGCTCTTAGGCTTAATGGATTCACCTCTCACCAGCTTAAATTGATTCAGTTGGTCATCAGAAAACACTTCAAAGATCTTTCTTATGTCAGTGTGAATAGCGAGGCTTCTAATTTACAGCAATTGGTTGTGTATACAGACTCAAAGGATGAATTAAACTCACTTCTGAAAAAAGTGAAAGAAGAAAATCATGGGGCAGAAAAAATGAAAATCCAAGCTGCTGTGGGACTTCGCCATGTTATTGATCTCCTTTCATCGGAGCAGAAGTTGATTGTTGGTCACAATTGTTTTCTAGATCTTGCTCATGTCTACAGCAAATTTATAGGCCCCCTTCCTGATACTCCTGAAGAGTTTGTTACCTCTGTTAACAAGTGCTTTCCGCACATTGTTGACACCAAGATACTTCTTAACACTAATTTTATGCTCCACGAAAAAATGAAAAGATCCAGAAAATCACTGGCAGCTGCATTCACGTCATTTTGCCCACAAATTGCAGCTGGCTCCACAAGCAGTTATCCAGGTTCACTCTCACATGTGAAAGTGGAAGTTGAAGTTGATGATGTGAGATCATCCAGCTGGAACCCTGGAGGCAAGCATGAGGCAGGATATGATGCCTTCATGACTGGATGCATCTTTGCCCAGTTATGCAGTGATTTAGGTATCGATTACAAACTCCACGATTCTTCAAAACAATTAGCCCTTGATGAGAAACTGCAGAATTATGTTAATCGTCTATATCTTAGTTGGATGCATGGGGACATTATTGATCTAAGTACTGGTAATAAGGTTGGAGATTCTTCACCCAGCTATAGCCTCAGGAAGCGGTACCCAAAAATTTTGTTTGAAAATATTGTTATTATTTGGGGATTTCCTTCTAAGCTGAAGGCAAATGAAGTAAGAGAGTGCATATCTAAAGTATTTGGACCAACTTCTGTAGTTTCTGTCTTCCACCTGGATGCAACTGCAGTATTCGTTCAGTTTAGCAAAACAGAACTAGTTTCTGATTTTCTTTCATTGAAAAACACCTTAGAGGGAAGTGATGGTGCACTCTTGGTTTTGCATCCACTGTCAAAACTTTTGGAAGGTGGAAATACATGTGCTGCTAATTATGGTACTTACAAAGAAATTTGTGGTTCACCCTTATCAGAATGCCTGTTTGCTGATCAGGTAAAAGCAGTTGGTATAAAGTGGAAGACCAAATTGCCAGAATTCAAGATAGCATTGGGGGTTGAAGAACATGAAAATCCAAGTGTAGGTAATGTAAATATTGCTATGGAGACTGTGAAAATGACCAAGCCAAACACAATTGATCAATTGAGAAATGCTCCATTTCGGAGACAAGTCTCCACACATGAGGTTGAAGATTCTTGTGTTGCAGAAGCCAACTTGTGA 2139 0.4296 MKHKLPTPSLSRAVARALCPATTTQCDSAFPSKTVTTANFEPSLAELRRHVRSSDFVAIDLEMSGITSAPWRESLEFDRSDVRYLKVRDSATKFAVVQFGVCPFRWDSSNNSFVAYPHSFYVFPRQEHAGLGPCDEFLWQTTSMDFLAKYQFDFNACIHEGISYLSREQERKALRSLNSTYDSEWSDICKLKDVRDMPLLSAADILFTARMKNKFREWRDGLLHEQNLEDQIQGDTGDSKFQEMFFEMHPALRLNGFTSHQLKLIQLVIRKHFKDLSYVSVNSEASNLQQLVVYTDSKDELNSLLKKVKEENHGAEKMKIQAAVGLRHVIDLLSSEQKLIVGHNCFLDLAHVYSKFIGPLPDTPEEFVTSVNKCFPHIVDTKILLNTNFMLHEKMKRSRKSLAAAFTSFCPQIAAGSTSSYPGSLSHVKVEVEVDDVRSSSWNPGGKHEAGYDAFMTGCIFAQLCSDLGIDYKLHDSSKQLALDEKLQNYVNRLYLSWMHGDIIDLSTGNKVGDSSPSYSLRKRYPKILFENIVIIWGFPSKLKANEVRECISKVFGPTSVVSVFHLDATAVFVQFSKTELVSDFLSLKNTLEGSDGALLVLHPLSKLLEGGNTCAANYGTYKEICGSPLSECLFADQVKAVGIKWKTKLPEFKIALGVEEHENPSVGNVNIAMETVKMTKPNTIDQLRNAPFRRQVSTHEVEDSCVAEANL* 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0607 712 Pfam CAF1 family ribonuclease 35 461 IPR006941 -
Pvu6g0607 712 PANTHER POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1 31 647 - -
Pvu6g0607 712 Gene3D - 259 510 IPR036397 GO:0003676
Pvu6g0607 712 SUPERFAMILY Ribonuclease H-like 34 473 IPR012337 -
Pvu6g0607 712 Coils Coil 291 318 - -
Pvu6g0607 712 Gene3D - 34 192 IPR036397 GO:0003676
Pvu6g0607 712 PANTHER POLY(A)-SPECIFIC RIBONUCLEASE PNLDC1 31 647 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0607 Pvu-Chr6 17492513 17496494 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0607 K01148 - gmx:100808217 1177.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0607 6 17492513 17496494 Pvu6g0607 6 17492513 17496494 ECH