Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0601 ATGCACCATCACCTCCGTCCGGCAATGATGCCGGTGCTCGCGGCGGCGGTCCTCCTCCTCGCAACCCTCTCCCAAGCGCACAACATCACGCGCATCCTCGCGCAGCACCCGGAGTTCTCCACCTTCAACCACTACCTCACCCTCACGCATCTCGCCCCCGAAATCAACGGAAGAACCACCATCACCGTCTGTGCCGTCGACAACGCCGCCATGGACGAACTCCTCTCCAAGCACCCTTCCATCTACACCATCAAAAACATCCTCTCCCTCCATGTCCTCCTCGACTACTTCGGTGCCAAGAAGCTCCACCAGATCACAAACGGCACAGCCCTCGCCGCCACCATGTACCAGGCCACCGGCACTGCCCCGGGCTCCGCTGGCTTCGTCAACATCACCGACCTCCACGGTGGTAAGGTCGGATTCGGCGCCGAAAACAACGATGGAACCCTGACCTCCACCTTCGTGAAATCCGTGGAAGAAATGCCTTACAACATCTCCGTAATCCAGATCAGCAAAATTCTCCCCTCGGCTGCAGCGGAAGCCCCTGCACCGGCACCCACGCAGCAAAACCTCACCAGCATTATGTCCAAACACGGTTGCAAAGTCTTCGCCGACACTCTTTCTTCCTTTGGCGACGCGCTTACCACCTTCAACGACAACCTCGGTGGTGGATTAACCGTTTTCTGCCCCCTCGACGACGCCTTCAAAGCTTTCCTTCCCAAATTCAAAAACCTAACAGCTTCTGGCAAACTCGCGCTTCTCGAATTCCATGGCGTGCCGGTGTACCAATCCCTTGCCACCCTAAAATCAAACAATGGACTTCAGAACACCTTGGCCACCGACGGAGCTAACAAATTCGACTTCACAGTGCAAAACGACGGTGAAGATGTCACTCTCAATACGAGGCTCACCACGGCGAAGATCACCGACACCATAATCGATCAACAGCCTCTCGCGGTTTTCGCTATCAATAAGGTCCTTCTCCCTAAGGAGTTGTTCAAGGGTCAGGCACTGGCTCCGGCTCCCGCGCCGGAGCCTTCTGCCGCTGACGCTCCTGCGCCGGCGAAGGGGAAGAAGAAGAAGAAAAAGGCTGCTGACGCACCTGCTGCGGATTCGAATTCCGACGCGCCGGCGGACTCCCCCGGGGACGCCGCCGATGACACCGCTGACGATAGTAACGGCGCCGTTATACCTGAAGGCAGAAGCTTTGGTAATGTTGTTATTGCCTTGGGTTTGGTTTTTGGGTTACCGTTAGTGCTGTGA 1263 0.5677 MHHHLRPAMMPVLAAAVLLLATLSQAHNITRILAQHPEFSTFNHYLTLTHLAPEINGRTTITVCAVDNAAMDELLSKHPSIYTIKNILSLHVLLDYFGAKKLHQITNGTALAATMYQATGTAPGSAGFVNITDLHGGKVGFGAENNDGTLTSTFVKSVEEMPYNISVIQISKILPSAAAEAPAPAPTQQNLTSIMSKHGCKVFADTLSSFGDALTTFNDNLGGGLTVFCPLDDAFKAFLPKFKNLTASGKLALLEFHGVPVYQSLATLKSNNGLQNTLATDGANKFDFTVQNDGEDVTLNTRLTTAKITDTIIDQQPLAVFAINKVLLPKELFKGQALAPAPAPEPSAADAPAPAKGKKKKKKAADAPAADSNSDAPADSPGDAADDTADDSNGAVIPEGRSFGNVVIALGLVFGLPLVL* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0601 420 ProSiteProfiles FAS1/BIgH3 domain profile. 187 327 IPR000782 -
Pvu6g0601 420 SUPERFAMILY FAS1 domain 32 174 IPR036378 -
Pvu6g0601 420 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 1 8 398 - -
Pvu6g0601 420 Pfam Fasciclin domain 37 114 IPR000782 -
Pvu6g0601 420 Pfam Fasciclin domain 202 329 IPR000782 -
Pvu6g0601 420 SMART fasc_3 62 177 IPR000782 -
Pvu6g0601 420 SMART fasc_3 226 330 IPR000782 -
Pvu6g0601 420 Gene3D FAS1 domain 170 330 IPR036378 -
Pvu6g0601 420 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 8 398 IPR033254 -
Pvu6g0601 420 MobiDBLite consensus disorder prediction 339 396 - -
Pvu6g0601 420 ProSiteProfiles FAS1/BIgH3 domain profile. 26 174 IPR000782 -
Pvu6g0601 420 SUPERFAMILY FAS1 domain 183 330 IPR036378 -
Pvu6g0601 420 Gene3D FAS1 domain 25 169 IPR036378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0601 Pvu-Chr6 17424637 17426188 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0601 - - gmx:100810878 603.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0601 6 17424637 17426188 Pvu6g0601 6 17424637 17426188 ECH