Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0521 ATGGTGACAGAGGAACAAATATCGGAAGCGGTATCGTCGCTGCTGCGCGAATCGAACCCTAGCCAGCGTAGCTTCACGACGCTGAACCAGGTGGTGGAGGAGCTTCAGGCCAAGCTCGGCCACGACCTCTCACACAAGCTCGATTTCATCACCGCGCAGATCAACCTCCTGTTCGGATCGCAACCACAACCACCACAACCTCCGCCGCAAAATGCGCACAGGCAGATACAACAGCCGAAAGACCATTTTGCCCCTCCACCAAACCCTAATTTCCACTCTGTTCCTGTCAGTTCCGGCTTCCAGGCTCCCAAATTCCCTAATTCTAACGCTGTCGTCGCCACTGCTGCTGATATTTCGCGTGCTGTAGCTCCTGCTCCTGTTCCTGCTCCTGCGCCTGTTAACGATGCTCCGAAGGAAAGTACTCAAACAAAGGCGAAGAGAAGAGGTGGCCCAGGAGGTCTCACCAAACTTTGTGGTGTATCGCCTGAACTTCAGGTCATTGTTGGCCAGCCAGCACTGTCGAGGACTGAGATTGTCAAGCAACTGTGGGCTTACATAAGGAAAAACAATCTTCAAGATCCCAGCAACAAAAGGAAAATAATTTGCAATGAAGAGCTGCGTGTGGTGTTTGAGACTGATTGTACTGATATGTTCAAGATGAACAAGTTGCTAGCTAAACACATTATCCCCCTTGAACCAACCAAAAAGCCTGTTCCAAAAAAGCAGAAGGTAGATGTGGACTCAGGAAAAAGAATTGCTGAACCTACTCCTTCTGTAGTAATATCTGATGCACTCGCTAACTTTTTTGGCGTTACTGAAAGGGAGATGCTACAGTCTGAGGTTCTGAGACGTATCTGGGAGTACATAAAAGTCAACCAGCTAGAGGATCCTATGAATCCTATGGCAATACTGTGTGATGCGAAGCTTCAGGAGATCTTTGGCTGTGAAAGCATTTCAGCATTGGGAATACCTGAAGTTCTGGGCGGTCATCATATTTTTAGGAGTTCATGA 1011 0.4837 MVTEEQISEAVSSLLRESNPSQRSFTTLNQVVEELQAKLGHDLSHKLDFITAQINLLFGSQPQPPQPPPQNAHRQIQQPKDHFAPPPNPNFHSVPVSSGFQAPKFPNSNAVVATAADISRAVAPAPVPAPAPVNDAPKESTQTKAKRRGGPGGLTKLCGVSPELQVIVGQPALSRTEIVKQLWAYIRKNNLQDPSNKRKIICNEELRVVFETDCTDMFKMNKLLAKHIIPLEPTKKPVPKKQKVDVDSGKRIAEPTPSVVISDALANFFGVTEREMLQSEVLRRIWEYIKVNQLEDPMNPMAILCDAKLQEIFGCESISALGIPEVLGGHHIFRSS* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0521 336 Pfam DEK C terminal domain 2 58 IPR014876 -
Pvu6g0521 336 CDD SWIB-MDM2_like 259 330 - -
Pvu6g0521 336 ProSiteProfiles SWIB/MDM2 domain profile. 254 333 IPR003121 -
Pvu6g0521 336 SUPERFAMILY SWIB/MDM2 domain 253 331 IPR036885 -
Pvu6g0521 336 Gene3D SWIB/MDM2 domain 253 336 IPR036885 -
Pvu6g0521 336 Gene3D SWIB/MDM2 domain 149 237 IPR036885 -
Pvu6g0521 336 SMART swib_2 154 233 IPR019835 -
Pvu6g0521 336 SMART swib_2 255 336 IPR019835 -
Pvu6g0521 336 CDD SWIB-MDM2_like 158 228 - -
Pvu6g0521 336 SUPERFAMILY SWIB/MDM2 domain 147 233 IPR036885 -
Pvu6g0521 336 PANTHER - 1 332 - -
Pvu6g0521 336 Gene3D - 1 58 - -
Pvu6g0521 336 ProSiteProfiles SWIB/MDM2 domain profile. 153 230 IPR003121 -
Pvu6g0521 336 MobiDBLite consensus disorder prediction 126 154 - -
Pvu6g0521 336 MobiDBLite consensus disorder prediction 58 99 - -
Pvu6g0521 336 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 1 332 - -
Pvu6g0521 336 Pfam SWIB/MDM2 domain 259 330 IPR003121 -
Pvu6g0521 336 Pfam SWIB/MDM2 domain 158 228 IPR003121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0521 Pvu-Chr6 16454776 16458734 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Pvu6g0521 SWIB 6.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0521 K15223 - gmx:100801960 541.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0521 6 16454776 16458734 Pvu6g0521 6 16454776 16458734 ECH