Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0420 ATGGTTTCAAGTGAAGATTGGTATGATATCACACACTTCAAAGAGTTGGTATTGGAAGAAAGATGGAAGCACGTTATTAGTGCATATGAGAACGACAGTGAGTACCACAAAGTCATAATCAACGAAAGCAGAGGCACTGCACTGCATGTGGCAGTGAATGATGGGAATGTGGAGCTTGTTAGCATTCTTGTTGAAGCAATCTTGAGGCATGAAGGGAGGGGAAAGTTGAGGGATGACAGTGCACTGAGGTCAACCAATGAGAGAGGGAACACTCCTTTGCATCTTGCAGCTTCCAGAGGGTTCATTGGCATGTGTAAGTTCATCATAGGGGAAAATGGTGAAAGGAAGGATTTGATTAGGGTTAGGAACAAGAAGCGTGAAACACCTATTTTCAAGGCTGTGCTCACAGGCGAAAGAAAGGCCTTTCTGTACCTTTACGATGTTTCCAAAGATTTAGATGTTTCACTTACGAACGATCATGAAGACACCATCCTTCACAAATCCATTTGGAGAGAATCGTTGGATTTGGCAATTATAATAAACCATTGTTATCCTGGACTTGTGAACATACGAAACAACGATGATGCCACACCTCTCAAAGTTCTTGCTTGCAGACCTTCAGCGTTCAAGAGTGGAAACAATCTCCCATGGTGGAAGCAAATTCTATATTATTTTATTTCTGTAGAACCTCTAGATGTTGTTCAAGCTATAAATTCGTACATGGAGGAAGTTAAAAAAGAAGAACCTCTAGATGCAAAGAAAACTAAAATATTATACATGGAAGACGACCATGAACACAAAGGTAAACTTACTTTCGATTAA 822 0.4027 MVSSEDWYDITHFKELVLEERWKHVISAYENDSEYHKVIINESRGTALHVAVNDGNVELVSILVEAILRHEGRGKLRDDSALRSTNERGNTPLHLAASRGFIGMCKFIIGENGERKDLIRVRNKKRETPIFKAVLTGERKAFLYLYDVSKDLDVSLTNDHEDTILHKSIWRESLDLAIIINHCYPGLVNIRNNDDATPLKVLACRPSAFKSGNNLPWWKQILYYFISVEPLDVVQAINSYMEEVKKEEPLDAKKTKILYMEDDHEHKGKLTFD* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0420 273 PANTHER REPEAT PROTEIN, PUTATIVE-RELATED 24 245 - -
Pvu6g0420 273 Pfam Ankyrin repeats (3 copies) 41 114 IPR002110 GO:0005515
Pvu6g0420 273 SUPERFAMILY Ankyrin repeat 26 208 IPR036770 -
Pvu6g0420 273 Gene3D - 12 240 IPR036770 -
Pvu6g0420 273 ProSiteProfiles Ankyrin repeat profile. 88 109 IPR002110 GO:0005515
Pvu6g0420 273 ProSiteProfiles Ankyrin repeat region circular profile. 88 109 - -
Pvu6g0420 273 PANTHER CASKIN 24 245 - -
Pvu6g0420 273 SMART ANK_2a 88 117 IPR002110 GO:0005515
Pvu6g0420 273 SMART ANK_2a 125 154 IPR002110 GO:0005515
Pvu6g0420 273 SMART ANK_2a 43 72 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0420 Pvu-Chr6 15045864 15050901 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0420 45 166 Miscellaneous Gene Families AT5G50140 30.882 8.99e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0420 - - pvu:PHAVU_006G040100g 556.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0420 6 15045864 15050901 Pvu6g0420 6 15045864 15050901 ECH