Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0083 ATGGAACTCCGCCGTCGATCCTCCTCCACCGCCGCCAAGGCCTCCGACGCCCTCCCCCTCCCTCTTCACCTGACCAACGCCTTCTTCTTCACCCTCTTCTTCTCCGTCGCCTACTACCTCCTCAACCGCTGGCGCGACAAGATCACTTCCTCCTCCCCCCTCCACCTCCTCTCCCTCTCCGACATAGCCGCCATCTTCGCCCTTCTCGCCTCCGTCATCTACCTCCTCGGCTTCTTCGGCATTCACTTCGTCCAGTCCTTCGTTGTCCGTCCTGCCGACGACGACGAAGAACCATCAGAATGCACCTCCTTCGATAAAGTCGACGGTCAAGAAAACGACGTCATGATGGCCGACTCGATAACCAAGGGAGCTGCACAACCTTCTCCACTTCTATGCACGGAACCAGTGAAACTGGTTGCGTGCGGGGTCGACAATGACATCATGGTCGATTCTGTCACGAAGGGGAAGAGAGTCATACAACCTTCTTTTCAAAACGTGAAACCAATGGTGAAAGAATTGGTTTCTTCCATTGACAGAGTCTATCATGACGAAGACGACGTCTTCATTGGCTCCGTCCTAAACGGGACTGTTCCCTCGTACTCACTTGAATCGCGTCTCGGGGATTGTCGCAGGGCTGCCGCGATCCGGCGAGAGGCGCTTCAAAGGACTACGGGACGGTCGTTGGGAGGACTGCCTCTGGAGGGGTTTGATTACGATGCAATTCTCGGGCAGTGCTGTGAGATGCCGGTGGGGTATGTGCAGGTTCCGGTGGGAGTGGCGGGGCCGCTGCTGCTGGATGGGGCGGAGTATACGGTGCCGATGGCAACAACGGAGGGGTGTCTGGTGGCGAGCACGAACAGAGGGTGCAAGGCGATCTACGCGTCCGGTGGGGCGACTAGTGTGATTCTGAGGGATGGGATGAGTAGGGCGCCGGTTGTGAGATTCGCGACGGCAAAAAGGGCTGCGGAGTTGAAGTTCTTTATGGAAGATACTCTCAATTTTGATACCTTGGCCGTCGTTTTCAACAAGTCAAGTAGATTTGGCAGGCTTCAAAGCATTAAGTGCTCTATTGCGGGAAAGAATGTTTATCTTAGATTTACCAGTAGTACGGGTGATGCCATGGGAATGAACATGGTTTCCAAAGGGGTTCAGAATGTTCTTGATTTCCTTCAAAGTGATTTCCCTGATATGGATGTTATTGGCATCTCGGGAAATTACTGTTCGGACAAGAAACCTGCAGCGGTAAATTGGATTGAGGGACGTGGGAAGTCAGTAGTTTGTGAAGCAACTATCAAAGAACATATAGTGAAAAAGGTGTTGAAGACCAATGTGGCAGCTTTGGTTGAGCTTAACATGCTAAAAAATCTTGCTGGCTCTGCTGTTGCTGGTGCTCTTGGTGGATACAATGCTCATGCCAGCAACATTGTTTCTGCCATTTTTATATCCACTGGTCAAGATCCGGCACAGAATGTTGAGAGTTCCCATTGCATAACCATGATGGAAGCTGTGAATGATGGGCGAGACCTTCACATCTCAGTGACCATGCCTTCAATAGAGGTGGGTACAGTGGGGGGTGGAACTCAACTACCATCTCAATCTGCATGCTTGAATCTTCTTGGTGTGAAGGGTGCAAGCAAGGATTCACCAGGATCAAACTCGAGGCTTTTGGCCACCATTGTTGCTGGATCTGTTCTGGCAGGGGAGCTGTCGCTGATGTCTGCTATAGCTGCAGGGCAGTTAGTGAAGAGCCACATGAAATACAACAGATCAAATAGAGATATGTCTACAGTATCATCCAGACAAGAAAGTTAA 1812 0.5132 MELRRRSSSTAAKASDALPLPLHLTNAFFFTLFFSVAYYLLNRWRDKITSSSPLHLLSLSDIAAIFALLASVIYLLGFFGIHFVQSFVVRPADDDEEPSECTSFDKVDGQENDVMMADSITKGAAQPSPLLCTEPVKLVACGVDNDIMVDSVTKGKRVIQPSFQNVKPMVKELVSSIDRVYHDEDDVFIGSVLNGTVPSYSLESRLGDCRRAAAIRREALQRTTGRSLGGLPLEGFDYDAILGQCCEMPVGYVQVPVGVAGPLLLDGAEYTVPMATTEGCLVASTNRGCKAIYASGGATSVILRDGMSRAPVVRFATAKRAAELKFFMEDTLNFDTLAVVFNKSSRFGRLQSIKCSIAGKNVYLRFTSSTGDAMGMNMVSKGVQNVLDFLQSDFPDMDVIGISGNYCSDKKPAAVNWIEGRGKSVVCEATIKEHIVKKVLKTNVAALVELNMLKNLAGSAVAGALGGYNAHASNIVSAIFISTGQDPAQNVESSHCITMMEAVNDGRDLHISVTMPSIEVGTVGGGTQLPSQSACLNLLGVKGASKDSPGSNSRLLATIVAGSVLAGELSLMSAIAAGQLVKSHMKYNRSNRDMSTVSSRQES* 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0083 603 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 574 587 IPR023076 GO:0004420
Pvu6g0083 603 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A REDUCTASE 4 599 - -
Pvu6g0083 603 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 365 379 IPR023076 GO:0004420
Pvu6g0083 603 Gene3D - 256 584 IPR023074 GO:0004420
Pvu6g0083 603 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 4 599 IPR002202 GO:0004420|GO:0015936
Pvu6g0083 603 CDD HMG-CoA_reductase_classI 192 589 IPR004554 GO:0004420|GO:0005515|GO:0008299
Pvu6g0083 603 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 185 589 IPR002202 GO:0004420|GO:0015936
Pvu6g0083 603 Pfam Hydroxymethylglutaryl-coenzyme A reductase 213 589 IPR002202 GO:0004420|GO:0015936
Pvu6g0083 603 Gene3D - 306 422 IPR009023 -
Pvu6g0083 603 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 245 266 IPR002202 GO:0004420|GO:0015936
Pvu6g0083 603 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 272 292 IPR002202 GO:0004420|GO:0015936
Pvu6g0083 603 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 363 381 IPR002202 GO:0004420|GO:0015936
Pvu6g0083 603 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 403 428 IPR002202 GO:0004420|GO:0015936
Pvu6g0083 603 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 454 480 IPR002202 GO:0004420|GO:0015936
Pvu6g0083 603 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 508 529 IPR002202 GO:0004420|GO:0015936
Pvu6g0083 603 Gene3D - 181 255 IPR023282 GO:0004420
Pvu6g0083 603 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 178 578 IPR009029 GO:0015936|GO:0016616
Pvu6g0083 603 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 520 527 IPR023076 GO:0004420
Pvu6g0083 603 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 306 422 IPR009023 -
Pvu6g0083 603 TIGRFAM HMG_CoA_R_NADP: hydroxymethylglutaryl-CoA reductase (NADPH) 190 589 IPR004554 GO:0004420|GO:0005515|GO:0008299
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0083 Pvu-Chr6 4471497 4475482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0083 4 595 Lipid Metabolism Gene Families AT1G76490 69.529 0.0 833
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0083 K00021 - gmx:100779932 939.873
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0083 6 4471497 4475482 Pvu8g2162 8 51998792 52002592 PCT