LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu6g0020	ATGAATGCAGTTTACATTTCTCCGAACCATTTAATTTCTCTACCATGTTACAAACCCAGGCAATTTTTCAGTTCCGCAAGAGAGAGCACTTTGAGTGGAAGAACTCCTCTTATTCAGATTAGAGGCCGGAGTATTGTAAGTGCATGTCTTAATGTGGATGTTGCTGCACATAACACCAGCAAGTCAAAATTGGAGAAAACTAAGGATGTGATAGAGATGGAAGGGAAGTTTTTGGTGGGGACATATGCTAGAACACCAGTGGTGCTTGAGAGGGGGGAAGGTTGCAAGTTGTATGACGTTGAAGGGAGAGAATATTTAGATTTGAGTTCTGGGATTGCTGTCAATGCACTAGGACACGGTGATGTAGATTGGTTAAAAGCTGTTGTTGAACAGGCTGCCACCCTTACTCATACCAGCAATATATTCTACACAATACCTCAGGTAAAACTTGCAAAGCGTCTCGTGGATTCTTCTTTTGCCGATCGTGTGTTCTTTTCAAATTCTGGAACTGAAGCAAATGAAGCAGCTATTAAATTTGCCAGAAAACATCAGAGACACACAACTACTAATGGAAAAGAGCCAGCAACAGAATTCATTGCTTTTAGTAACGGCTTCCATGGGAGAACCTTGGGTGCACTTGCTTTGACAAGTAAAGTGCAATATAGAACACCTTTTGAACCCATTATGCCTGGAGTGACCTTTTTAGAGTATGGAGATGCTCAGGCTGCAACAGAGTTAATTAAGCAGGGCAAAATTGCTGCAGTTTTTGTGGAACCCCTCCAAGGAGAAGGTGGAATTTACAGTGCTACAAAAGAATTTCTACAGTCCCTGCGGAATGCTTGTGATGAAACTGGGACACTTCTTGTGTTTGATGAGGTTCAATGTGGTTTAGGTAGAACAGGGTTGTTATGGGCCCATGAGGCATATGGCGTCTTCCCTGATATGATGACCCTTGCAAAGCCTCTTGCGGGAGGCCTACCTATTGGACTTGTTTTAGTGACGGAGAGTGTTGCTTCTTCTATAAATTATGGTGATCATGGAAGCACTTTTGCAGGAAACCCTCTTGTTTGCAGTGCTGCTATTGCTGTTTTTGATAAAATATCAAAACCTGAGTTCCTGTCATCTGTATCTAAGAAAGGCCTCTACTTCAAAGAACTACTCAGGCAGAAGTTGGGAGGAAACCGACATGTGAGAGAAATTCGTGGTGTTGGGCTAATCATAGGAGTAGATTTAGATGTATCTGCCTCGCCCTTTGTCGAAGCTTGTCAAAATTCTGGCCTGTTAGTGTTAACTGCTGGAAAAGGAAATGTAGTGAGGATTGTTCCACCATTGATCATAACAGAGAAGGAGATCGAGCAAGCTGTCCACATTTTGTTCCAAAATTTAAAAGTTCTTGATAAGTAG	1404	0.4217	MNAVYISPNHLISLPCYKPRQFFSSARESTLSGRTPLIQIRGRSIVSACLNVDVAAHNTSKSKLEKTKDVIEMEGKFLVGTYARTPVVLERGEGCKLYDVEGREYLDLSSGIAVNALGHGDVDWLKAVVEQAATLTHTSNIFYTIPQVKLAKRLVDSSFADRVFFSNSGTEANEAAIKFARKHQRHTTTNGKEPATEFIAFSNGFHGRTLGALALTSKVQYRTPFEPIMPGVTFLEYGDAQAATELIKQGKIAAVFVEPLQGEGGIYSATKEFLQSLRNACDETGTLLVFDEVQCGLGRTGLLWAHEAYGVFPDMMTLAKPLAGGLPIGLVLVTESVASSINYGDHGSTFAGNPLVCSAAIAVFDKISKPEFLSSVSKKGLYFKELLRQKLGGNRHVREIRGVGLIIGVDLDVSASPFVEACQNSGLLVLTAGKGNVVRIVPPLIITEKEIEQAVHILFQNLKVLDK*	468

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu6g0020	467	SUPERFAMILY	PLP-dependent transferases	79	462	IPR015424	-
	Pvu6g0020	467	PANTHER	AMINOTRANSFERASE CLASS III	31	466	-	-
	Pvu6g0020	467	TIGRFAM	argD: transaminase, acetylornithine/succinylornithine family	78	460	IPR004636	GO:0006525\|GO:0008483
	Pvu6g0020	467	Gene3D	-	121	371	IPR015421	GO:0003824
	Pvu6g0020	467	Pfam	Aminotransferase class-III	85	459	IPR005814	GO:0008483\|GO:0030170
	Pvu6g0020	467	PANTHER	ACETYLORNITHINE AMINOTRANSFERASE	31	466	-	-
	Pvu6g0020	467	CDD	OAT_like	71	458	IPR005814	GO:0008483\|GO:0030170
	Pvu6g0020	467	PIRSF	Transaminase_4ab_Lys_Orn	41	224	IPR005814	GO:0008483\|GO:0030170
	Pvu6g0020	467	PIRSF	Transaminase_4ab_Lys_Orn	237	465	IPR005814	GO:0008483\|GO:0030170
	Pvu6g0020	467	ProSitePatterns	Aminotransferases class-III pyridoxal-phosphate attachment site.	288	325	IPR005814	GO:0008483\|GO:0030170
	Pvu6g0020	467	Hamap	Acetylornithine/succinyldiaminopimelate aminotransferase [argD].	77	465	IPR004636	GO:0006525\|GO:0008483
	Pvu6g0020	467	Gene3D	Aspartate Aminotransferase, domain 1	87	451	IPR015422	GO:0003824

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu6g0020	Pvu-Chr6	454776	459628	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu6g0020	K00818		-	gmx:100797501	791.571

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu6g0020	6	454776	459628	Pvu6g0020	6	454776	459628	ECH