Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1807 ATGAACAGAGTGGGAGACTGGAAGTGCAGGTGGTGCCAGCACCTGAACTTTGAGAGGCGCGAGTGTTGCCAACGTTGTGGCGGTTTTAAAGGCGGAGAGGGGAAGGATTACGGTGGTTTTGCTGAGTCACATGTTCGACCAGGTGACTGGTACTGTGATGTGTCTAACTGTGCTTCACACAACTTTGCTAGCCGTTTAACCTGCTTCAAGTGTGGTGCTTTCAAGAACACTGCTGCTCACACTTCATCCTCAACACCCTCTTCCAGACCTGGATGGAAGTCTGGTGATTGGATATGTAACAGGTGA 306 0.5033 MNRVGDWKCRWCQHLNFERRECCQRCGGFKGGEGKDYGGFAESHVRPGDWYCDVSNCASHNFASRLTCFKCGAFKNTAAHTSSSTPSSRPGWKSGDWICNR* 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1807 101 ProSiteProfiles Zinc finger RanBP2 type profile. 3 32 IPR001876 -
Pvu5g1807 101 SUPERFAMILY Ran binding protein zinc finger-like 42 77 IPR036443 -
Pvu5g1807 101 PANTHER ZINC FINGER PROTEIN 1 101 - -
Pvu5g1807 101 ProSiteProfiles Zinc finger RanBP2 type profile. 46 77 IPR001876 -
Pvu5g1807 101 SUPERFAMILY Ran binding protein zinc finger-like 3 31 IPR036443 -
Pvu5g1807 101 SMART zf_4 48 74 IPR001876 -
Pvu5g1807 101 SMART zf_4 5 29 IPR001876 -
Pvu5g1807 101 Pfam Zn-finger in Ran binding protein and others 46 73 IPR001876 -
Pvu5g1807 101 ProSitePatterns Zinc finger RanBP2-type signature. 7 26 IPR001876 -
Pvu5g1807 101 Gene3D - 41 78 - -
Pvu5g1807 101 Gene3D - 2 31 - -
Pvu5g1807 101 ProSitePatterns Zinc finger RanBP2-type signature. 50 71 IPR001876 -
Pvu5g1807 101 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 1 101 - -
Pvu5g1807 101 MobiDBLite consensus disorder prediction 78 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1807 Pvu-Chr5 39845238 39845543 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1807 - - pvu:PHAVU_005G175000g 210.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1595 10 42324833 42326739 Pvu5g1807 5 39845238 39845543 ECH
Pvu5g1807 5 39845238 39845543 Pvu5g1807 5 39845238 39845543 ECH
Pvu5g1807 5 39845238 39845543 Pvu10g1595 10 42324833 42326739 PCT