Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1774 ATGCCTCTCAGACTCGAAATCAAGCGAAAGCTTGCGCAAAGATCAGAAAGAGTAAAATGCGTGGATCTGCATCCAACAGAACCATGGATTCTGGCGAGTTTATACTCTGGAACTGTCTGTATCTGGAACTACCAATCTCAGACCATGACCAAATCTTTTGAGGTTACTGAGTTGCCAGTTAGATCGGCCAAGTTTATTGCACGCAGACAGTGGGTTGTTGCTGGAGCAGATGATATGTTTATTCGTGTATATAATTATAACACGATGGATAAGGTCAAAGTATTTGAAGCACATACTGATTACATTAGGTGTGTGGCAGTTCATCCCACCCTTCCTTATGTGCTTTCATCATCTGATGATATGCTCATAAAGCTCTGGGATTGGGAAAAAGGTTGGGTCTGTACCCAGATATTTGAAGGCCATTCTCATTATGTCATGCAAGTTACATTTAATCCCAAAGACACAAACACCTTTGCCAGTGCATCTCTTGATCGAACCATAAAGATTTGGAATCTTGGCTCTCCTGACCCTAATTTTACATTGGATGCACATCAGAAGGGAGTGAATTGCGTTGATTATTTTACAGGTGGTGACAAACCGTATCTAATCACTGGTTCTGATGATCACACTGCCAAGGTATGGGATTATCAGACCAAAAGTTGTGTCCAGACCCTAGATGGTCACACACACAATGTATCTGCTGTATGCTTCCATCCTGAACTTCCTATAATCATTACTGGTTCTGAAGATGGTACAGTACGCATATGGCACTCCACGACTTATAGGCTTGAGAACACATTGAACTATGGCCTTGAAAGAGTTTGGGCTATTGGATACTTGAGGGCTTCCCGTCGAGTTGTGATTGGCTATGATGAAGGAACAATTATGGTCAAACTTGGTCGAGAGGTACCTGTGGCTAGCATGGACAACAGCGGGAAAATTATTTGGGCTAAGCATAATGAAATCCAGACTGTCAATATCAAAAGTGTAGGAGCAGATGTAGAGATTGCTGATGGAGAAAGGTTACCTTTAGCTGTTAAGGAGTTGGGCACCTGTGATCTCTATCCCCAAAATTTAAAGCACAATCCAAATGGGAGGTTTGTTGTTGTATGTGGAGATGGTGAGTATATTATATACACTGCATTGGCTTGGAGAAATAGGTCATTTGGTTCAGCACTGGAATTTGTTTGGTCTTTTGAGGGAGAATATGCTGTCAGAGAGAGTACATCAAAGATTAAAATTTTTAGCAAAACTTTCCAGGAAAAGAGGAGTGTCCGACCAACATTTTCTGCTGAAAGAATATTTGGTGGCACTTTACTGGCAATGTGCTCCAATGATTTCATTTGCTTTTACGATTGGGCTGAATGCAGGTTGATCTATCGCATTGATGTCAGTGTGAAAAACCTCTACTGGGCTGACAGTGGTGATCTAGTAACGATTGCTAGTGATACATCATTCTACATTCTGAAGTACAATCGTGATGTTGTTATATCACATTTAGATAGTGGAAGACCGGTAGACGAGGAAGGTGTTGAAGATGCTTTTGAACTCTTACATGAAATGAATGAGCGTGTTAGGACAGGCATCTGGGTTGGGGATTGCTTTATCTACAACAATTCCTCTTGGAGACTTAACTACTGCGTTGGTGGTGAGGTTACTACAATGTTTCATTTGGACCGCCCTATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAATGTAATGGGATACACACTACTTTTAAGCTTGATTGAGTACAAGACACTTGTGATGCGTGGTGATTTGGAAAGGGCCAATGAAATTCTGCCATCAATCCCTAAAGAGCATCATAACAGTGTGGCTCACTTCCTGGAATCACGAGGGATGATAGAAGATGCTCTTGAAGTAGCTACTGACCCTGACTACAGATTTGATCTAGCGATACAACTTGGAAAACTAGATGATGCAAAGAGTATTGCAATAGAATTACAGAGTGAGACTAAATGGAAGCAGTTGGGAGAATTAGCTATGTCTACTGGAAAGTTAGAAATGGCTGAGGAATGTTTGCAGCATGCAATGGATTTGAGTGGTTTGTTACTCCTATATTCTTCTTTAGGAGATGCTGAAGGAATATCGAAACTTGCATTCCTTGCTAAGGAACAAGGGAAGAACAATGTTGCTTTCCTGTGCTTATTTATGTTGGGTAAATTAGAAGACTGCCTCCAACTATTGGTAGAAAGCAATCGAATTCCAGAGGCAGCTTTAATGGCTCGATCTTATCTTCCGAGTAAGGCATCAGAGATAGTGGCAATTTGGAGAAAAGATCTCAATAAGGTTAATCCAAAAGCTGCTGAATCATTGGCTGATCCTGAAGAATATCCAAATTTGTTTGAAGACTGGCAAGTTGCACTTGCTGTTGAATCTAAAGCTGCAGAAACAAGGGATGTGTACCCTCCTGCGGACCAGTACGTCAACCATGCTGACAAATCACACATTACCCTTGTTCAAGCTTTCAGAAATATGCAGATTGAGGAAGAAGAGGAGCATCTGGAGAATGGGTTGACTGAACAAAATGGAGAAGAGCACTACACAGAGGAACAAAATGGAGAGGAAGGAAGCCAAGAGGAGGCAGTTGTAGTGGATGCAGATTCTACAGATGGTGCAGTACTCGTTAATGGTAACGAGGCTGAAGAAGACTGGGTGCTTGCCCCACATCACTAG 2727 0.4158 MPLRLEIKRKLAQRSERVKCVDLHPTEPWILASLYSGTVCIWNYQSQTMTKSFEVTELPVRSAKFIARRQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAIGYLRASRRVVIGYDEGTIMVKLGREVPVASMDNSGKIIWAKHNEIQTVNIKSVGADVEIADGERLPLAVKELGTCDLYPQNLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSFEGEYAVRESTSKIKIFSKTFQEKRSVRPTFSAERIFGGTLLAMCSNDFICFYDWAECRLIYRIDVSVKNLYWADSGDLVTIASDTSFYILKYNRDVVISHLDSGRPVDEEGVEDAFELLHEMNERVRTGIWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLGYLANQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEILPSIPKEHHNSVAHFLESRGMIEDALEVATDPDYRFDLAIQLGKLDDAKSIAIELQSETKWKQLGELAMSTGKLEMAEECLQHAMDLSGLLLLYSSLGDAEGISKLAFLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKASEIVAIWRKDLNKVNPKAAESLADPEEYPNLFEDWQVALAVESKAAETRDVYPPADQYVNHADKSHITLVQAFRNMQIEEEEEHLENGLTEQNGEEHYTEEQNGEEGSQEEAVVVDADSTDGAVLVNGNEAEEDWVLAPHH* 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1774 908 PRINTS G protein beta WD-40 repeat signature 158 172 IPR020472 -
Pvu5g1774 908 PRINTS G protein beta WD-40 repeat signature 202 216 IPR020472 -
Pvu5g1774 908 PRINTS G protein beta WD-40 repeat signature 244 258 IPR020472 -
Pvu5g1774 908 Pfam WD domain, G-beta repeat 91 127 IPR001680 GO:0005515
Pvu5g1774 908 Pfam WD domain, G-beta repeat 177 215 IPR001680 GO:0005515
Pvu5g1774 908 Pfam WD domain, G-beta repeat 18 43 IPR001680 GO:0005515
Pvu5g1774 908 Pfam WD domain, G-beta repeat 220 256 IPR001680 GO:0005515
Pvu5g1774 908 Pfam WD domain, G-beta repeat 133 171 IPR001680 GO:0005515
Pvu5g1774 908 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 138 172 - -
Pvu5g1774 908 ProSiteProfiles Trp-Asp (WD) repeats profile. 138 180 IPR001680 GO:0005515
Pvu5g1774 908 ProSiteProfiles Trp-Asp (WD) repeats profile. 181 224 IPR001680 GO:0005515
Pvu5g1774 908 SMART WD40_4 88 127 IPR001680 GO:0005515
Pvu5g1774 908 SMART WD40_4 4 43 IPR001680 GO:0005515
Pvu5g1774 908 SMART WD40_4 218 257 IPR001680 GO:0005515
Pvu5g1774 908 SMART WD40_4 174 215 IPR001680 GO:0005515
Pvu5g1774 908 SMART WD40_4 131 171 IPR001680 GO:0005515
Pvu5g1774 908 SMART WD40_4 46 85 IPR001680 GO:0005515
Pvu5g1774 908 PANTHER COATOMER SUBUNIT BETA' 1 872 - -
Pvu5g1774 908 SUPERFAMILY C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 199 488 IPR011048 -
Pvu5g1774 908 CDD WD40 17 297 - -
Pvu5g1774 908 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 181 218 - -
Pvu5g1774 908 Pfam Coatomer WD associated region 319 763 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Pvu5g1774 908 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 225 256 - -
Pvu5g1774 908 SUPERFAMILY WD40 repeat-like 3 297 IPR036322 GO:0005515
Pvu5g1774 908 MobiDBLite consensus disorder prediction 850 908 - -
Pvu5g1774 908 ProSiteProfiles Trp-Asp (WD) repeats profile. 225 266 IPR001680 GO:0005515
Pvu5g1774 908 MobiDBLite consensus disorder prediction 850 871 - -
Pvu5g1774 908 PIRSF Beta'-COP 2 884 IPR016453 -
Pvu5g1774 908 ProSiteProfiles Trp-Asp (WD) repeats profile. 95 127 IPR001680 GO:0005515
Pvu5g1774 908 PANTHER COATOMER 1 872 - -
Pvu5g1774 908 Gene3D - 11 300 IPR015943 GO:0005515
Pvu5g1774 908 Gene3D - 590 798 - -
Pvu5g1774 908 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 95 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1774 Pvu-Chr5 39536799 39547553 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1774 60 367 Miscellaneous Gene Families AT5G08390 22.899 1.95e-13 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1774 K17302 - gmx:100815780 1777.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1774 5 39536799 39547553 Pvu5g1774 5 39536799 39547553 ECH
Pvu5g1774 5 39536799 39547553 Pvu10g1570 10 42082979 42093446 PCT