Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1614 ATGTTTCAAGTTCCAGGGGTGTCGGGAATCCTTAACCCAGGAGGGCATGGCCATAACAAGATCAAAGGGACAGTGGTGCTGATGCGCAAGAATGTGTTGGACTTCAACTCCGTCTCTGATCTCACCAAAGGAAACGTTGGTGGAGTCATTGGAACTGGTCTCGGCGTTGTTGGTTCAACAGTTGACACCCTCACTGCTTTCTTAGGCAGAAGTGTCTCTCTCCAGCTCATCAGTGCCACTCAATCTGATGAAAATGGAAAAGGAAAAGTTGGAAAGGACACGTTCATTGAAGGGATCATTACCTCGTTACCAACTTTGGGAGCGGGAGAGTCTGCATTCTATGTTCGTTTTGAATGGGACGGAAGCATGGGAATCCCTGCTGCATTTCACATCAAGAATTACATGCAAGTTGAGTTTTACCTCAAGAGTTTGACTCTTGAAGACGTTCCAAACCAAGGAACCATTCGCTTTGTCTGCAACTCATGGATTTACAACGCTAACATTTACAAAAAGAGCGTGCGCACATTCTTTGCCAACCATAGTTATGTTCCAAGTGAGACACCAGCAGCACTTGTGCATTATAGAGAAGAGGAGTTGAAGAATTTAAGAGGAGATGGTACTGGAGAACGCGTAGAACATGATAGGATCTATGATTATGATGTATACAATGATTTGGGTAATCCAGATCTCAATGAAGATTTCGCTCGTCCTATTCTTGGAGGCTCTGCCACTCATCCCTACCCTCGTAGGGGAAGAACTGGTCGATATCCAACAAGGAAAGATTCGAAATGTGAGAAGCCAGGAGAAATTTATGTTCCAAGAGATGAAAACTTTGGTCACTTGAAATCTTCGGATTTCCTTGCAAATGGAATAAAATCTATATCTCAGTTTGTCTTACCAGCCTTCGAATCTGTGTTCGACCTTAACCTGACCCCGACAGAGTTTGATAGCTTCCAAGATGTTCGTGACCTCTGTGAAGGTGGAATTAAGCTTCCTACAAACGTAATCAGCACAATTAGCCCCTTACCAGTCGTCAAAGAACTCTTTCGTACCGATGGTGAACAAGTTCTCAAGTTTCCAACACCTCACGTCATTCAAGTGAGTAAGTCAGCATGGATGACCGATGAAGAATTTGGAAGAGAGATGATTGCAGGAGTAAATCCTAATGTGATTCGTGGTCTTCAAGAGTTTCCTCCTAAAAGCAATCTGGATCCTGCAACCTATGGTGATCAAAACAGTAAGATAACAGCAGATGTGCTTGATCTAGATGGAAGCACAGTGGATGAGGCTCTTGCTAATAAGAGGTTATTTGTCTTAGATTACCATGATATCTTCATGCCATATATAAGGAGGATAAATCAGACTTATGCCAAAACTTATGCCACAAGGACTATCCTTTTCTTGAAAGAAGATGGAACTTTGAAGCCAGTGGCCATCGAATTAAGCTTGCCACATCCTGGTGGGGACCACTCAGGTGCTATCAGTCAAGTCATCTTACCTGCAAAAGAAGGCGTTGAAAGTACAATTTGGCTACTAGCCAAAGCCTATGTAGTTGTAAATGACTCTTGCTATCATCAACTCATGAGCCATTGGTTAAATACTCATGCAGTGATGGAGCCATACGTCATAGCAACACACCGGCAGCTTAGTGCCCTTCACCCAATTTATAAGCTTCTAACTCCTCATTATCGTGACACCATGAACATCAATGCACTTGCCAGGCAGACTCTAATTAATGCTGATGGCATAATAGAGAAATCCTTTTTGCCCTCAAAGTATTCTGTGGAGATGTCCTCAGCGGTTTATAAGAATTGGGTTTTCACTGATCAAGCACTACCTGCAGATCTTATCAAGAGAGGAGTGGCAGTTGAGGATCCATCAGCCCCACATGGACTTCGTCTCTTGATAGAAGACTACCCTTATGCTGTTGATGGACTAGAGATATGGGCTCTGATTAAGTCATGGGTCCAAGAATATGTGTCATTATACTATGCAAAAGAAGATGATGTCAAATCTGATCCTGAACTCCAACATTGGTGGAAAGAAGTTGTGGAGAAAGGACATGGTGATTTGAAAGACAAGCCATGGTGGCCTAAGTTGCAGACACCTGAGGAGCTTGTTGAAGTCTGCACCATTATCATATGGACTGGTTCAGCCCTCCATGCAGCCGTGAATTTTGGTCAATACCCTTATGCAGGTTTTGTTCTGAATCGCCCAACTTCTTCTAGACGGTTGCTTCCTGAGCAAGGCACACCAGAATATGAAGAAATGGTGAAGAGCCATCAAAAGGCCTATTTAAGAACAATTACATCAAAGTTTCAGACTCTGATTGACCTTTCAGTGATAGAGATGTTGTCAAGGCATGCCTCTGATGAGATCTACCTTGGCCAAAGGGACAACCCATATTGGACCTCTGATTCCAAAGCCTTGGAAGCCTTTCAAAAGTTTGGAAACAAGCTGAAGGAAATTGAGGAAAAACTTGGAAGGAAGAACACTGATGAGAAACTTAGAAATCGAGTTGGACCAGTTCAATTGCCTTACACTTTGCTTCATCCTACCAGTGACGAAGGTTTGACTTTCAGGGGAATTCCTAATAGCATTTCCATCTGA 2610 0.431 MFQVPGVSGILNPGGHGHNKIKGTVVLMRKNVLDFNSVSDLTKGNVGGVIGTGLGVVGSTVDTLTAFLGRSVSLQLISATQSDENGKGKVGKDTFIEGIITSLPTLGAGESAFYVRFEWDGSMGIPAAFHIKNYMQVEFYLKSLTLEDVPNQGTIRFVCNSWIYNANIYKKSVRTFFANHSYVPSETPAALVHYREEELKNLRGDGTGERVEHDRIYDYDVYNDLGNPDLNEDFARPILGGSATHPYPRRGRTGRYPTRKDSKCEKPGEIYVPRDENFGHLKSSDFLANGIKSISQFVLPAFESVFDLNLTPTEFDSFQDVRDLCEGGIKLPTNVISTISPLPVVKELFRTDGEQVLKFPTPHVIQVSKSAWMTDEEFGREMIAGVNPNVIRGLQEFPPKSNLDPATYGDQNSKITADVLDLDGSTVDEALANKRLFVLDYHDIFMPYIRRINQTYAKTYATRTILFLKEDGTLKPVAIELSLPHPGGDHSGAISQVILPAKEGVESTIWLLAKAYVVVNDSCYHQLMSHWLNTHAVMEPYVIATHRQLSALHPIYKLLTPHYRDTMNINALARQTLINADGIIEKSFLPSKYSVEMSSAVYKNWVFTDQALPADLIKRGVAVEDPSAPHGLRLLIEDYPYAVDGLEIWALIKSWVQEYVSLYYAKEDDVKSDPELQHWWKEVVEKGHGDLKDKPWWPKLQTPEELVEVCTIIIWTGSALHAAVNFGQYPYAGFVLNRPTSSRRLLPEQGTPEYEEMVKSHQKAYLRTITSKFQTLIDLSVIEMLSRHASDEIYLGQRDNPYWTSDSKALEAFQKFGNKLKEIEEKLGRKNTDEKLRNRVGPVQLPYTLLHPTSDEGLTFRGIPNSISI* 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1614 869 PRINTS Lipoxygenase signature 507 524 IPR013819 GO:0016702|GO:0046872
Pvu5g1614 869 PRINTS Lipoxygenase signature 525 542 IPR013819 GO:0016702|GO:0046872
Pvu5g1614 869 PRINTS Lipoxygenase signature 545 565 IPR013819 GO:0016702|GO:0046872
Pvu5g1614 869 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 19 182 IPR036392 GO:0005515
Pvu5g1614 869 PANTHER LIPOXYGENASE 1 869 IPR000907 GO:0016702|GO:0046872
Pvu5g1614 869 Gene3D PLAT/LH2 domain 15 182 - -
Pvu5g1614 869 Gene3D - 282 370 IPR027433 -
Pvu5g1614 869 Gene3D - 503 868 - -
Pvu5g1614 869 MobiDBLite consensus disorder prediction 241 264 - -
Pvu5g1614 869 ProSitePatterns Lipoxygenases iron-binding region signature 1. 525 539 IPR020833 GO:0016702|GO:0046872
Pvu5g1614 869 Gene3D - 371 502 - -
Pvu5g1614 869 CDD PLAT_LH2 20 179 IPR042057 -
Pvu5g1614 869 ProSiteProfiles PLAT domain profile. 52 177 IPR001024 GO:0005515
Pvu5g1614 869 Pfam Lipoxygenase 191 852 IPR013819 GO:0016702|GO:0046872
Pvu5g1614 869 PANTHER SEED LINOLEATE 13S-LIPOXYGENASE-1 1 869 - -
Pvu5g1614 869 SMART LH2_4 19 179 IPR001024 GO:0005515
Pvu5g1614 869 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 181 869 IPR013819 GO:0016702|GO:0046872
Pvu5g1614 869 Pfam PLAT/LH2 domain 85 177 IPR001024 GO:0005515
Pvu5g1614 869 SUPERFAMILY Lipoxigenase 183 869 IPR036226 -
Pvu5g1614 869 ProSitePatterns Lipoxygenases iron-binding region signature 2. 552 562 IPR020834 GO:0016702|GO:0046872
Pvu5g1614 869 Gene3D - 183 281 - -
Pvu5g1614 869 PRINTS Plant lipoxygenase signature 147 165 IPR001246 GO:0016491
Pvu5g1614 869 PRINTS Plant lipoxygenase signature 174 195 IPR001246 GO:0016491
Pvu5g1614 869 PRINTS Plant lipoxygenase signature 213 229 IPR001246 GO:0016491
Pvu5g1614 869 PRINTS Plant lipoxygenase signature 246 265 IPR001246 GO:0016491
Pvu5g1614 869 PRINTS Plant lipoxygenase signature 312 333 IPR001246 GO:0016491
Pvu5g1614 869 PRINTS Plant lipoxygenase signature 357 373 IPR001246 GO:0016491
Pvu5g1614 869 PRINTS Plant lipoxygenase signature 396 415 IPR001246 GO:0016491
Pvu5g1614 869 PRINTS Plant lipoxygenase signature 460 484 IPR001246 GO:0016491
Pvu5g1614 869 PRINTS Plant lipoxygenase signature 782 796 IPR001246 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1614 Pvu-Chr5 38251108 38255120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1614 10 869 Acyl Lipid Metabolism Gene Families AT1G55020 58.267 0.0 1019
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1614 K15718 - gmx:547774 1527.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1614 5 38251108 38255120 Pvu10g1401 10 40680936 40685745 PCT