Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1543 ATGCTGAGACCTTCATGCAAGAGAACTGGTGTAAAGGTGTGTGAAGGAAGGCCAGGGACGGTCGCTCTCAGGGAGATCAGGAAGTACCAGAAGAGCACCGAACTTCTGATCCGAAAACTTCCATTCCAGCGACTTGTGAGAGAAATCGCTCAGGATTTCAAAACCGATCTCCGGTTCCAGAGTAGCGCCGTCTCTGCTCTTCAGGAAGCAGCTGAGGCTTACCTCGTTGGACTCTTTGAGGACACTAATCTCTGCGCCATTCACGCCAAGAGAGTTACCATTATGCCCAAAGACATTCAACTCGCACGCAGAATCAGAGGCGAGAGGGCTTAG 333 0.5135 MLRPSCKRTGVKVCEGRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA* 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1543 110 PANTHER HISTONE H3 11 110 - -
Pvu5g1543 110 Pfam Core histone H2A/H2B/H3/H4 15 106 IPR007125 GO:0003677
Pvu5g1543 110 Gene3D Histone, subunit A 4 110 IPR009072 GO:0046982
Pvu5g1543 110 SMART h35 9 110 IPR000164 GO:0000786|GO:0003677|GO:0030527
Pvu5g1543 110 ProSitePatterns Histone H3 signature 2. 41 49 IPR000164 GO:0000786|GO:0003677|GO:0030527
Pvu5g1543 110 PRINTS Histone H3 signature 8 29 IPR000164 GO:0000786|GO:0003677|GO:0030527
Pvu5g1543 110 PRINTS Histone H3 signature 32 49 IPR000164 GO:0000786|GO:0003677|GO:0030527
Pvu5g1543 110 PRINTS Histone H3 signature 54 72 IPR000164 GO:0000786|GO:0003677|GO:0030527
Pvu5g1543 110 PRINTS Histone H3 signature 72 88 IPR000164 GO:0000786|GO:0003677|GO:0030527
Pvu5g1543 110 PRINTS Histone H3 signature 88 109 IPR000164 GO:0000786|GO:0003677|GO:0030527
Pvu5g1543 110 SUPERFAMILY Histone-fold 16 107 IPR009072 GO:0046982
Pvu5g1543 110 PANTHER HISTONE H3 11 110 IPR000164 GO:0000786|GO:0003677|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1543 Pvu-Chr5 37701645 37703231 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1543 K11253 - jre:108998674 182.185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1543 5 37701645 37703231 Pvu11g0587 11 4906257 4907241 ECH
Pvu5g1543 5 37701645 37703231 Pvu5g1543 5 37701645 37703231 ECH
Pvu5g1543 5 37701645 37703231 Pvu11g0587 11 4906257 4907241 PCT