Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1475 ATATACAATAAGGTTTCTATCTATCATATCTACGTTACAGAAATACCATACTATAAATACAATTCAACTCTCTTTCACCTTTCCTACTTCTCTCTTCTCTCTTCTCTGTCCTGTTTTTTTTTTCCTTCTCAATCTCACAACCAACCCATTCCTTCAACTCTCTCTCTCCTCCCTCACCCTTTTTCGTTGATGGCGTCCCAAGCAAGCCTCCTCCTTCAGAAGCAGCTCAAAGATCTCTGCAAGAACCCCGTTGATGGATTTTCCGCCGGTTTGGTCGACGAAACCAACATTTTTGAATGGAGCGTCACTGTAATTGGGCCTCCCGATACTCTCTATGAGGGAGGATTTTTCAATGCCATTATGAGCTTTCCACCCAACTACCCAAATAGTCCGCCATCAGTGAAATTTACCTCTGAGATATGGCATCCCAATGTTTATCCTGATGGGCGAGTTTGCATATCAATTCTTCATCCTCCTGGTGACGATCCGAATGGTTATGAGCTTGCAAGTGAGCGTTGGACACCTGTTCATACAGTAGAAAGTATAGTATTAAGTATCATATCGATGCTTTCTAGTCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCGAAAGAGTGGAGAGACAGGAGAGATGAATTCAAGAAAAAAGTTAGCCGGTGCGTGCGGAAGTCACAAGAAATGTTGTGA 690 0.4261 IYNKVSIYHIYVTEIPYYKYNSTLFHLSYFSLLSSLSCFFFPSQSHNQPIPSTLSLLPHPFSLMASQASLLLQKQLKDLCKNPVDGFSAGLVDETNIFEWSVTVIGPPDTLYEGGFFNAIMSFPPNYPNSPPSVKFTSEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANVEAAKEWRDRRDEFKKKVSRCVRKSQEML* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1475 229 Gene3D Ubiquitin Conjugating Enzyme 64 229 IPR016135 -
Pvu5g1475 229 SMART ubc_7 70 227 - -
Pvu5g1475 229 CDD UBCc 80 222 IPR000608 -
Pvu5g1475 229 SUPERFAMILY UBC-like 66 225 IPR016135 -
Pvu5g1475 229 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 67 227 IPR000608 -
Pvu5g1475 229 Pfam Ubiquitin-conjugating enzyme 72 221 IPR000608 -
Pvu5g1475 229 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 141 156 IPR023313 -
Pvu5g1475 229 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 13 65 229 - -
Pvu5g1475 229 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 65 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1475 Pvu-Chr5 37152857 37156562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1475 74 194 Miscellaneous Gene Families AT3G17000 32.308 2.95e-12 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1475 K10575 - gmx:100782328 327.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1475 5 37152857 37156562 Pvu5g1475 5 37152857 37156562 ECH
Pvu5g1475 5 37152857 37156562 Pvu11g0671 11 5696764 5701550 PCT