Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1450 ATGGAGATTGATCTGTCTCCCAAGTTGGCGAAGGAAGTTTATGGAGGCAATGGTGGGTCCTACCACGCCTGGTCCCCCTCTGAGCTTCCCATGCTTCGTCAAGGTAACATTGCCGCCGCCAAACTCTCTCTGCACAAAAACGGTTTCGCCCTTCCTCGATATTCTGACTCTTCCAAAGTCGCTTATGTTCTTCAAGGAAGTGGAGTGGCTGGAATAGTGCTGCCTGAATCAGAAGAGAAGGTTGTTGCAATCAAGAAGGGGGATGCCCTGGCACTCCCCTTTGGTGTTGTGACATGGTGGTATAACAAGGAAGAAACTGAGTTGGTTGTTCTGTTCCTTGGGGACACTTCCAAGGCTCACAAGGCTGGTGAATTCACTGACTTTTTTCTGACTGGTTCCAATGGAATCTTCACCGGTTTTTCCACTGAGTTTGTGGCCAGGGCTTGGGACTTGGAAGAGAGTGATGTCAAGACCCTTGTTGGAAAACAATCAGGCAAAGGGATTGTGCAGTTGGAAGGGAACATCACACTGCCTGAGCCTAAACCGGAGCACCGGAATGGCATGGCCTTGAACTGTGAAGAGGCTCCGTTGGATGTTGACATTAAGGGTGGTGGAAGGGTTGTGGTGTTGAACACCAAGAATCTTCCCTTGGTTGGTGATGTTGGACTCGGGGCAGACCTTGTGAGGTTGGATGGAAGAGCCATGTGCTCTCCTGGATTCTCTTGTGATTCTGCTTTGCAGGTTACTTATATTGTCAGGGGTAGTGGCCGGGTTCAGGTTGTTGGAGTTGATGGTCAAAGGGTTTTGGAGACAACCATAAAAGCTGGTAATTTGTTCATTGTGCCAAGGTTTTTTGTGGTCTCAAAGATTGCTGATCCAGAGGGAATGGAGTGGTTCTCTATAATCACCACCCCTAATCCTATATTTACCCACATGGCTGGAAGTTCTTCTGTGTGGAAGGCTTTATCATCTTCTGTTCTGCAAGCTGCTTTCAATGTAGATTCAGTAGTGGAGCAACTATTCCGTTCAAAGAGGACTTCCGATGCCGTTTTCTTCCCTCCACCAAATTAG 1071 0.4818 MEIDLSPKLAKEVYGGNGGSYHAWSPSELPMLRQGNIAAAKLSLHKNGFALPRYSDSSKVAYVLQGSGVAGIVLPESEEKVVAIKKGDALALPFGVVTWWYNKEETELVVLFLGDTSKAHKAGEFTDFFLTGSNGIFTGFSTEFVARAWDLEESDVKTLVGKQSGKGIVQLEGNITLPEPKPEHRNGMALNCEEAPLDVDIKGGGRVVVLNTKNLPLVGDVGLGADLVRLDGRAMCSPGFSCDSALQVTYIVRGSGRVQVVGVDGQRVLETTIKAGNLFIVPRFFVVSKIADPEGMEWFSIITTPNPIFTHMAGSSSVWKALSSSVLQAAFNVDSVVEQLFRSKRTSDAVFFPPPN* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1450 356 SUPERFAMILY RmlC-like cupins 16 343 IPR011051 -
Pvu5g1450 356 SMART Cupin_1_3 195 339 IPR006045 -
Pvu5g1450 356 SMART Cupin_1_3 3 157 IPR006045 -
Pvu5g1450 356 CDD cupin_11S_legumin_C 198 353 - -
Pvu5g1450 356 Pfam Cupin 11 156 IPR006045 -
Pvu5g1450 356 Pfam Cupin 199 336 IPR006045 -
Pvu5g1450 356 PRINTS 11-S seed storage protein family signature 211 231 IPR006044 GO:0045735
Pvu5g1450 356 PRINTS 11-S seed storage protein family signature 258 274 IPR006044 GO:0045735
Pvu5g1450 356 PRINTS 11-S seed storage protein family signature 276 291 IPR006044 GO:0045735
Pvu5g1450 356 PRINTS 11-S seed storage protein family signature 294 312 IPR006044 GO:0045735
Pvu5g1450 356 PRINTS 11-S seed storage protein family signature 316 333 IPR006044 GO:0045735
Pvu5g1450 356 PANTHER - 2 346 - -
Pvu5g1450 356 Gene3D Jelly Rolls 196 356 IPR014710 -
Pvu5g1450 356 PANTHER OS03G0336100 PROTEIN-RELATED 2 346 - -
Pvu5g1450 356 Gene3D Jelly Rolls 4 195 IPR014710 -
Pvu5g1450 356 CDD cupin_11S_legumin_N 3 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1450 Pvu-Chr5 36935661 36938259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1450 35 347 Miscellaneous Gene Families AT2G18540 22.253 9.92e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1450 - - vra:106758740 652.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1450 5 36935661 36938259 Pvu5g1450 5 36935661 36938259 ECH
Pvu5g1450 5 36935661 36938259 Pvu11g0695 11 5868844 5871814 PCT