Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1443 ATGTCTGGTCGTGGAAAGGGTGGCAAGGGATTGGGAAAGGGAGGAGCGAAACGACATCGTAAGGTTCTTCGCGATAACATTCAGGGAATAACGAAGCCAGCGATTCGGCGATTGGCTCGCAGGGGTGGTGTGAAGCGTATCAGCGGTTTGATTTATGAGGAGACTCGTGGGGTTCTCAAGATCTTCTTGGAGAACGTGATTCGTGACGCCGTTACCTACACGGAGCACGCAAGGAGGAAGACTGTTACGGCTATGGATGTTGTGTATGCTCTGAAGAGACAGGGAAGGACCCTCTACGGATTTGGGGGTTAG 312 0.5224 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG* 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1443 103 Pfam Centromere kinetochore component CENP-T histone fold 39 96 IPR035425 -
Pvu5g1443 103 PRINTS Histone H4 signature 5 16 IPR001951 GO:0003677|GO:0030527
Pvu5g1443 103 PRINTS Histone H4 signature 20 39 IPR001951 GO:0003677|GO:0030527
Pvu5g1443 103 PRINTS Histone H4 signature 40 60 IPR001951 GO:0003677|GO:0030527
Pvu5g1443 103 PRINTS Histone H4 signature 62 76 IPR001951 GO:0003677|GO:0030527
Pvu5g1443 103 PRINTS Histone H4 signature 77 89 IPR001951 GO:0003677|GO:0030527
Pvu5g1443 103 PRINTS Histone H4 signature 89 100 IPR001951 GO:0003677|GO:0030527
Pvu5g1443 103 PANTHER HISTONE H4 1 103 - -
Pvu5g1443 103 MobiDBLite consensus disorder prediction 1 20 - -
Pvu5g1443 103 CDD H4 18 101 IPR001951 GO:0003677|GO:0030527
Pvu5g1443 103 SMART h44 16 90 IPR001951 GO:0003677|GO:0030527
Pvu5g1443 103 ProSitePatterns Histone H4 signature. 15 19 IPR019809 GO:0000786|GO:0003677
Pvu5g1443 103 PANTHER HISTONE H4 1 103 - -
Pvu5g1443 103 SUPERFAMILY Histone-fold 3 102 IPR009072 GO:0046982
Pvu5g1443 103 Gene3D Histone, subunit A 2 103 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1443 Pvu-Chr5 36864696 36865644 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1443 K11254 - egr:104422505 185.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1443 5 36864696 36865644 Pvu5g1443 5 36864696 36865644 ECH
Pvu5g1443 5 36864696 36865644 Pvu11g0715 11 6080517 6081294 PCT