Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1401 ATGCGAATCCTCCTCCTCCTCTCCCTCGCCACTCTCCTCCTCTTCTCCTCCTTCTCTTCCACCCTCTGCGCCAGCCCCGCCCCCGTGGACGACGACAATGAAGACCTCAGCTTCCTCGAAGACGAGACCTCCGCGCCGGATCACCACCACCACGACTTCGCTGATGACGCCAATTACGGCGACTTCGACGACGACTCCGAGGCCTATAAGCTGCCTGAGGTTGACGAGAAGGACGTCGCCGTTTTGAAGGACAAGAATTTCAGCGACGTCGTCAAGAACAACCGCTTCGTCATGGTCGAATTTTACGCGCCGTGGTGCGGCCACTGCCAGGCCCTCGCGCCGGAGTACGCCGCCGCCGCCACCGAGCTCAAGGGCGAAGATGTCATTTTGGCGAAGGTCGATGCCACGGAGGAGAATGAATTGGGGCAGCAGTACGATGTGCAGGGTTTTCCCACTATCTACTTCTTCGTTGATGGCATTCACAAGCCTTATAATGGCCAAAGGACCAAGGAGGCTATAGTGACGTGGATTAAGAAGAAGATTGGACCTGGTATATACAACTTGACTACATTGGAGGACGCTCAACGTATTTTGACCAATGAAACTAAAGTTGTTTTGGGCTTCCTCAACTCTTTAGTTGGTCCTGAGAGTGAGGAGCTTGCTTCCGCTTCAAGAATTGAGGATGATGTCAATTTTTATCAGACTGTGAATTCCGACGTCGCAAAGCTTTTCCATATTGACCCCGATGTTAAGCGCCCAGCTTTGATCCTCGTCAAGAAGGAGGAAGAAAAACTTAAGCACTTTGATGGCAAATTTGAGAAGTCTGCAATAGCGGACTTTGTCTTTTCCAACAAGCTTCCTTTGGTAACAATTTTTACAAGAGAAAGTGCCCCAGCAGTCTTCGAAAATTCAATCAAGAAACAGTTGTTGCTGTTTGCAACTTCAAATGATTCCGAGAAGTTCCTCCCAGTATTTCAAGAAGCAGCAAAATCTTTCAATGGAAAGTTGATATTTGTATATGTGGACCTGGATAATGAAGATGTTGGAAAGCCTGTTTCAGAATACTTTGGTATCAGTGGGGATGCTCCAAAAGTACTTGCATACACTGGGAATGATGATGGAAGAAAATTTCTGCTTGACGGAGAGGTGACTGCTGACAGAATTAAGGCATTTGGAGAAGATTTTCTCGATGACAAGCTAAAACCATTTCACAAGTCAGATCCAATTCCTGAAAAAAATGATGGTGATGTGAAAATAGTAGTTGGGAATAATTTTGATGAAATTGTCTTGGATGAGTCAAAGGATGTTCTCCTTGAGATTTATGCTCCCTGGTGTGGCCATTGCCAATCACTGGAGCCAATATATGACAAGCTTGCAAAACATCTTCGTAGTATCGAGTCTCTTGTAATAGCCAAGATGGATGGAACAACAAATGAGCACCCCAGGGCCAAGCCCGATGGATTCCCCACTCTTCTCTTCTTCCCAGCAGGAAACAAGAGTTTTGACCCTATTACTGTTGATACAGATCGTACTGTGGTAGCCTTCTACAAGTTCCTCAAGAAACATGCATCAATCACATTCAAGCTCCAGAAACCAACCTCAACAACTCAATCCGAGAGCTCTGGCGCCAAGGCGAGCTCCGATGCCACAGAGAGCCAGAGTAGCAATAGTGACGTGAAGGATGAATTATGA 1692 0.4693 MRILLLLSLATLLLFSSFSSTLCASPAPVDDDNEDLSFLEDETSAPDHHHHDFADDANYGDFDDDSEAYKLPEVDEKDVAVLKDKNFSDVVKNNRFVMVEFYAPWCGHCQALAPEYAAAATELKGEDVILAKVDATEENELGQQYDVQGFPTIYFFVDGIHKPYNGQRTKEAIVTWIKKKIGPGIYNLTTLEDAQRILTNETKVVLGFLNSLVGPESEELASASRIEDDVNFYQTVNSDVAKLFHIDPDVKRPALILVKKEEEKLKHFDGKFEKSAIADFVFSNKLPLVTIFTRESAPAVFENSIKKQLLLFATSNDSEKFLPVFQEAAKSFNGKLIFVYVDLDNEDVGKPVSEYFGISGDAPKVLAYTGNDDGRKFLLDGEVTADRIKAFGEDFLDDKLKPFHKSDPIPEKNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQSLEPIYDKLAKHLRSIESLVIAKMDGTTNEHPRAKPDGFPTLLFFPAGNKSFDPITVDTDRTVVAFYKFLKKHASITFKLQKPTSTTQSESSGAKASSDATESQSSNSDVKDEL* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1401 563 MobiDBLite consensus disorder prediction 530 563 - -
Pvu5g1401 563 SUPERFAMILY Thioredoxin-like 186 296 IPR036249 -
Pvu5g1401 563 SUPERFAMILY Thioredoxin-like 413 524 IPR036249 -
Pvu5g1401 563 CDD PDI_a_PDI_a'_C 417 519 - -
Pvu5g1401 563 MobiDBLite consensus disorder prediction 530 554 - -
Pvu5g1401 563 ProSiteProfiles Thioredoxin domain profile. 60 182 IPR013766 -
Pvu5g1401 563 ProSitePatterns Thioredoxin family active site. 98 116 IPR017937 -
Pvu5g1401 563 PRINTS Thioredoxin family signature 97 105 - -
Pvu5g1401 563 PRINTS Thioredoxin family signature 105 114 - -
Pvu5g1401 563 PRINTS Thioredoxin family signature 146 157 - -
Pvu5g1401 563 Pfam Thioredoxin-like domain 221 391 - -
Pvu5g1401 563 Pfam Thioredoxin 417 502 IPR013766 -
Pvu5g1401 563 Pfam Thioredoxin 79 179 IPR013766 -
Pvu5g1401 563 CDD PDI_a_family 81 177 - -
Pvu5g1401 563 Gene3D Glutaredoxin 412 526 - -
Pvu5g1401 563 TIGRFAM ER_PDI_fam: protein disulfide isomerase 77 563 IPR005792 GO:0003756
Pvu5g1401 563 TIGRFAM pdi_dom: protein disulfide-isomerase domain 82 180 IPR005788 GO:0003756
Pvu5g1401 563 Gene3D Glutaredoxin 67 181 - -
Pvu5g1401 563 CDD PDI_b_family 185 284 - -
Pvu5g1401 563 Gene3D Glutaredoxin 182 282 - -
Pvu5g1401 563 PANTHER PROTEIN DISULFIDE-ISOMERASE 5 544 - -
Pvu5g1401 563 SUPERFAMILY Thioredoxin-like 72 182 IPR036249 -
Pvu5g1401 563 ProSiteProfiles Thioredoxin domain profile. 394 524 IPR013766 -
Pvu5g1401 563 CDD PDI_b'_family 302 396 - -
Pvu5g1401 563 Gene3D Glutaredoxin 283 411 - -
Pvu5g1401 563 PANTHER PROTEIN DISULFIDE ISOMERASE 5 544 - -
Pvu5g1401 563 SUPERFAMILY Thioredoxin-like 284 414 IPR036249 -
Pvu5g1401 563 ProSitePatterns Thioredoxin family active site. 437 455 IPR017937 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1401 Pvu-Chr5 36348047 36352489 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1401 K09580 - gmx:100804924 932.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1401 5 36348047 36352489 Pvu5g1401 5 36348047 36352489 ECH
Pvu5g1401 5 36348047 36352489 Pvu11g0813 11 7330532 7334517 PCT