Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1313 ATGCAGACTCTTACGCCCCCCACTTCCAACGCGCTTAACCTCAACCACGTTATTCGTACGCGCCGCCTCGCCCCAACCCGACTCTCCGTCAAATGCGCTTACGCATTCGAACCGGCCAGCTACGGGGTCGGCTCCAGCCGAGCCGATTGGCAGAGTTCTTGCGCCATCTTAGCCAGCAAGGTTGTTTCTCAGGAACAATCCTCATCCGTTGACAAGAACGGTGGCACTGCCGACCACGTCGCTGCCGTTAATGGCCATAAGGCAGCCGTCAGCGACTTCCAACTCGTTCCCATCGGTAACCTCGCTGAGGCCAACAACAAGCCGCTCCCGCCGAAGCCGCTTACAATATCTGACTTCTCTCCGGCGCCTATGCACGGCTCGAAGCTCAGAGTCGCGTACCAGGGAGTTCCCGGCGCGTACTCCGAGGCTGCTGCCGGGAAAGCCTATCCGAACTGCGAGGCCATCCCGTGCGACCAGTTCGAGGTGGCGTTCCAGGCGGTGGAGCTTTGGATCGCCGATCGAGCGGTTTTACCGGTGGAAAACTCCCTCGGCGGTTCGATCCACCGCAACTACGACCTCCTCCTCCGCCACCGTCTCCACATCGTCGGCGAGGTCCAGCTCCCGGTCCACCACTGCCTCCTCGCTCTCCCCGGCGTTCGCAAGGACTTCCTCACGCGCGTAATCTCGCATCCGCAGGCGCTCTCGCAGTGCGAGCACACGCTCACCAAGCTCGGCCTCAACGTGGCGCGCGAGGCCGTCGACGACACCGCCGGCGCCGCGGAGTTCGTAGCCACTAACAACCTCCGCGACACCGCCGCCATCGCGAGCGCACGCGCGGCGGAGCTCTACGGATTGAACGTGATGGCGGACGGCATCCAGGACGACCCGAGCAACGTGACGCGCTTCGTGATGCTGGCCAGAGAGCCCATCATTCCCCGCACCGACCGTCCTTTCAAGACCAGCATTGTTTTCGCGCACGACAAAGGCACCTCCGTGCTTTTCAAAGTGCTTTCCGCCTTTGCTTTTCGCAACATCAGCTTGACGAAGATCGAGTCTCGGCCGCACCGCAACCGTCCGATTCGGCTTGTCGATGACGCCAACGTGGGAACCGCGAAGCACTTCGAGTACTTGTTTTACGTTGATTTCGAGGCTTCTATGGCTGAGGTGAGGGCTCAGAACGCGCTTGCAGAGGTTCAGGAATTCACCTCCTTCTTGCGAGTGTTGGGAAGTTACCCAATGGACATGACTCCCTGGTCCCCTTCCTCTCCCCCACATTGA 1278 0.6095 MQTLTPPTSNALNLNHVIRTRRLAPTRLSVKCAYAFEPASYGVGSSRADWQSSCAILASKVVSQEQSSSVDKNGGTADHVAAVNGHKAAVSDFQLVPIGNLAEANNKPLPPKPLTISDFSPAPMHGSKLRVAYQGVPGAYSEAAAGKAYPNCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVRKDFLTRVISHPQALSQCEHTLTKLGLNVAREAVDDTAGAAEFVATNNLRDTAAIASARAAELYGLNVMADGIQDDPSNVTRFVMLAREPIIPRTDRPFKTSIVFAHDKGTSVLFKVLSAFAFRNISLTKIESRPHRNRPIRLVDDANVGTAKHFEYLFYVDFEASMAEVRAQNALAEVQEFTSFLRVLGSYPMDMTPWSPSSPPH* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1313 425 CDD ACT_CM-PDT 319 412 - -
Pvu5g1313 425 CDD PBP2_Ct-PDT_like 128 309 - -
Pvu5g1313 425 Pfam Prephenate dehydratase 131 309 IPR001086 GO:0004664|GO:0009094
Pvu5g1313 425 ProSiteProfiles Prephenate dehydratase domain profile. 130 307 IPR001086 GO:0004664|GO:0009094
Pvu5g1313 425 ProSiteProfiles ACT domain profile. 321 412 IPR002912 -
Pvu5g1313 425 Gene3D - 214 295 - -
Pvu5g1313 425 PANTHER AROGENATE DEHYDRATASE 14 423 - -
Pvu5g1313 425 ProSitePatterns Prephenate dehydratase signature 1. 283 305 IPR018528 GO:0004664|GO:0009094
Pvu5g1313 425 SUPERFAMILY Periplasmic binding protein-like II 130 313 - -
Pvu5g1313 425 ProSitePatterns Prephenate dehydratase signature 2. 347 354 IPR018528 GO:0004664|GO:0009094
Pvu5g1313 425 Gene3D - 314 415 - -
Pvu5g1313 425 SUPERFAMILY ACT-like 302 414 IPR045865 -
Pvu5g1313 425 Gene3D - 125 213 - -
Pvu5g1313 425 PANTHER PREPHENATE DEHYDRATASE P PROTEIN 14 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1313 Pvu-Chr5 35153288 35155568 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1313 K05359 - gmx:100797636 790.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1313 5 35153288 35155568 Pvu5g1313 5 35153288 35155568 ECH
Pvu5g1313 5 35153288 35155568 Pvu11g0928 11 8974444 8975718 PCT