Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0960 ATGATTTCCTCCAGCAAACTCAAATCCGTGGATTTTTACAGAAAAATCCCAAGAGATTTAACTGAGGCATCATTATCCGGAGCAGGGTTATCCATAGTAGCAGCTCTCTGCATGGTGTTTTTGTTTGGAATGGAACTTAATAGTTATTTGTCTGTCAGCACCGCTACATCTGTTATTGTTGACAAGAGTAGTGATGGGGACTATTTACGTATAGATTTCAATATGAGTTTTCCTGCCCTCTCATGCGAGTTTGCAGCTGTTGATGTGAGTGACGTGCTGGGCACAAACAGGCTGAATCTAACGAAAACAATTCGGAAGTTTTCTATTGATTCAAATTTAAGATCCACTGGTAACGAGTTCCATTCAGAACCAACTACTACTAACATAAAGCACGATAATGAACAACATGAAGAATCCATTGGAGGTGCTCTTGAACTCACAACAGATAATTTTGATAAATATGCTCACCAGTTTCCAATTACAGTTATTAATTTTTATGCTCCTTGGTGTTATTGGAGTCAACGATTGAGACCTTCATGGGAAAAAGCATCTAAAATAATTAAAGAGAGATATGATCCAGAAACGGATGGTCGTATTGTTATGGGGAGGGTAGATTGTACTCAAAATGGAGAATTGTGCAGGAGCCATCATGTACAAGGGTATCCTTCAATTCGTATCTTTCGAAAAGGAAGTGATGTAAGGACTGACCATGGACATCATGATCACGAGTCCTATTATGGTGATCGCGACACAGATAGCCTAGTCAAGACAATGGATAATTTAGTGGCGTCTCTCCCTACAGAATCTCAAAAGTCACATTCGGGGGATAAATCCAATCTGGCGTCACACATAAAAAGACCAGCACCATCATCTGGGGGATGTAGAATTGAAGGATATGTGCGTGTCAAGAAGGTTCCTGGAAACTTGATCATCTCAGCTAGATCTGATGCCCATTCCTTTGATGCTTCTCAAATGAACATGTCACATGTCGTAAACCACTTATCTTTTGGAAGGAAAGTGTCACCTAGGGTTATGAGTGATGTGAAGCGCTTGATACCTTATGTTGGTAGCAGCCATGACAGGCTGAATGGCCTGTCATTTATCAACACTCGTGATTTTGGAGCAAATGTTACTATGGAGCATTACCTTCAGATAGTTAAAACAGAGGTGATAACAAGAAAAGATCATAAATTAGTTGAGGAGTATGAGTACACAGCGCACAGCAGTGTGGCACAGAGTTTACACATTCCTGTTGCTAAGTTCCATCTTGAGCTCTCCCCCATGCAGGTCTTAATAACGGAAAATCCGAAGTCCTTTTCTCACTTCATTACAAATGTGTGTGCTATTATTGGGGGCGTTTTCACGGTTGCTGGAATTTTGGACTCGATTTTGCATAACACTATTAGACTAATGAAAAAAGTTGAGCTTGGCAAAAATTTTTGA 1443 0.4019 MISSSKLKSVDFYRKIPRDLTEASLSGAGLSIVAALCMVFLFGMELNSYLSVSTATSVIVDKSSDGDYLRIDFNMSFPALSCEFAAVDVSDVLGTNRLNLTKTIRKFSIDSNLRSTGNEFHSEPTTTNIKHDNEQHEESIGGALELTTDNFDKYAHQFPITVINFYAPWCYWSQRLRPSWEKASKIIKERYDPETDGRIVMGRVDCTQNGELCRSHHVQGYPSIRIFRKGSDVRTDHGHHDHESYYGDRDTDSLVKTMDNLVASLPTESQKSHSGDKSNLASHIKRPAPSSGGCRIEGYVRVKKVPGNLIISARSDAHSFDASQMNMSHVVNHLSFGRKVSPRVMSDVKRLIPYVGSSHDRLNGLSFINTRDFGANVTMEHYLQIVKTEVITRKDHKLVEEYEYTAHSSVAQSLHIPVAKFHLELSPMQVLITENPKSFSHFITNVCAIIGGVFTVAGILDSILHNTIRLMKKVELGKNF* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0960 480 PANTHER ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN 1 480 IPR045888 -
Pvu5g0960 480 PANTHER PROTEIN DISULFIDE-ISOMERASE 5-3 1 480 - -
Pvu5g0960 480 MobiDBLite consensus disorder prediction 265 289 - -
Pvu5g0960 480 Pfam Endoplasmic reticulum vesicle transporter 285 461 IPR012936 -
Pvu5g0960 480 Pfam Thioredoxin 144 242 IPR013766 -
Pvu5g0960 480 SUPERFAMILY Thioredoxin-like 144 261 IPR036249 -
Pvu5g0960 480 Gene3D Glutaredoxin 125 286 - -
Pvu5g0960 480 CDD PDI_a_family 144 258 - -
Pvu5g0960 480 Pfam Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC) 7 97 IPR039542 -
Pvu5g0960 480 ProSiteProfiles Thioredoxin domain profile. 111 263 IPR013766 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0960 Pvu-Chr5 27510067 27520358 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0960 - - gmx:100806869 863.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0960 5 27510067 27520358 Pvu5g0960 5 27510067 27520358 ECH