Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0946 ATGGAGTCAATACTGGGTCGGGCTCTGGAGTACACTCTCAAGTACTGGCTCAAATCCTTCTCCCGAGAACAGTTCAAGTTGCAGGGACGCACCGTTCATCTCTCCAATTTAGATATCGACGGCGACGCCTTGCATTCCAGTATCGGATTGCCGCCGGCTCTCAACGTTGCCTCCGCCAAAGTCGGCAAACTAGAGATAACACTTCCGTCTGTGAGCAATGTTCAAACGGAACCAATCGTCGTGCAAATTGATAGACTCGATCTGGTTCTCGAAGAGAATTCTGATTTTGATGCATCTCTTAGTTCGAACTGTTCCACGCCGTCGGCTGCCTCCGCCAAGGGAAGTGGTTACGGTTTCGCTGATAAGATTGCAGATGGCATGACTATACAAATTCAAACAGTTAATCTATTACTTGAAACTTGTGGTGGTTCTCGTCGCCAAGGGGGAGCAACATGGGCACCACCTATGGCATCTATCACCATACGCAACCTTTTGTTGTATACTACAAATGAAAACTGGCAGGTTGTAAATCTTAAGGAAGCGCGGGAATTCTCCAGTAACAAGAAGTATATATATGTCTTCAAAAAACTGGAATGGCAATCTTTGTCTATTGATCTTTTACCTCATCCCGACATGTTCACAGAAGCTACACTAGACCACTCTGAGGAGGGGTCAAACTTTAGAGATGATGATGGCGCAAAACGTGTATTCTTTGGAGGAGAGCGTTTTATAGAAGGAATATCAGGAGAAGCATATATCACAATTCAGAGAACTGAGTTGAATAGTCCGCTCGGGCTTGAAGTTCAATTGCACATCAATGAAGCTGTTTGCCCTGCATTAAGTGAACCAGGACTACGTGCACTTCTCCGCTTTATGACGGGAGTATATGTTTGCCTAAACAGGGGTGATGTTGATTCCAAGCGATCCACTGAAGCAGCTGGGCGTTCTCTTGTCTCAATTGTCGTAGATCATATATTTCTTTGTATTAAAGATACTGAATTCCAGCTTGAGCTTTTGATGCAGTCCCTCTTTTTTTCTCGGGCCAGTCTTTCTGAAGGAGATAATGATAATAACTTGACGAGAATTACAATTGGTGGCTTATTTTTAAGGGACACCTTTTGTAGTCCTCCATGTATCTTAGTGCAACCATCAATGCAAGCTGGCACTAGAGATGCTTTCCGTGTGCCAGAATTTGCCAGAAGCTTTTGCCCTCCAATATATCCTTTACAAGAACAACAGTGGCAATTGATTGAGGGAACCCCTCTAATATGCCTCCATGCTCTTAAGATCATGCCTTCTCCACTTCCACCATCCTTTGCTTCTGAAACTGTTATTGACTGTCAGCCACTTGTGATTCATCTCCAGGAAGAATCATGTCTGAGGATATCCTCTTTCTTAGCTGATGGCATTGTTGTCAATCCTGGTGATATTTTACCAGATTTCTCGGTGAAATCTTTTATTTTCAATCTCAAGGGACTGGATCTTACAGTTCCTTTTGATAAGACCAAATTGGATAGTTCCAAAAATGACATGGACAATGCAGTCCAGACCTCCTTTTCTGGAGCCAGACTTCATATCGAAAGCCTTTTCTTTTTAAATTCGCCTTCCCTGAAACTGAGAATGCTGAACCTGGAGAAGGATCCTGCTTGCTTCAGTCTTTGGGAAGGTCAACCAATTGATGCTAGCCAGGAGAAATGGACTGCTAGAGCATCTCAGCTTACCTTGTTTCTGGAAGCAAGCATTGACGGACCTGGATGTCAAAATTCTCTTGGACAGACGGCAGGATTGTGGAGATGTGTTGATCTGAAAGATGCTTGCATTGAAGTGGCTATGGCAACTGCTGATGGAAGTCCATTGTTACAAGTTCCCCCACCTGGGGGTATTGTCAGGGTTGGAGTTGCTTGTGAACAGTATCTGTCCAACACTTCTATTGAACAATTGTTTTTTGTCCTTGATCTATATGGTTATTTTGGGAGTGTTAGTGAAAAGATAGCAATGGCTGGAAAAAGGAAACAATTGGAGGACATTAGGGACAAATCCTTTGGTGGAAAGCTGATGGACAAGGTTCCTAGTGATGCTGCTGTCAGTTTATCAGTGAAAAATCTCCAACTTCGATTTCTGGAGTCATCTTCTGTTAACATTGAGGGGATGCCTTTAGTGCAGTTTCTTGGAGATGATCTATTTACGAGTGTCACTCATAGAACCCTTGGAGGAGCTATTATTGTTTCATCTATTTTACGATGGGAGAGTGTTGAGATAAGTTGTGTAGATGCTGAGGGGCTCTTGCCATGTGAAAAGAGCTCTTTCTTATGTTCTAAGGAAAATGCTCCCTCACTGAGTGATAATGGATATCCTCAGCTAAGAACTGTTTTTTGGGTGCATAAGAACGAGAAACATCTATCGAATGGAAGTGCTCATTCAGTTCCTTTTCTAGATATATGCATGGAGCATGTAATACCATTGTATGACCAAGACTTGGAATCTCATAGTTTAAATGTCTCAGCTTCTGTATCTGGTGTTCGCCTTGGTGGTGGAATGAACTATGCTGAAGCACTCCTGCATAGGTTTGGAATACTTGGGCCTGATGGAGCTCCTGGAATGGGTCTTTGTAAAGGGTTGGAAAACTTACAGAAAGGACCATTGTCAAAACTTTTTAAGGCAACTCCTCTCATTGTTAATGATTCAGAAGATGTTAGAAGTATGATAGAAGGGAATGAAGCCACTTTTCCCCAATTGAAGAAGCCTGATGATGTGGATGTAACTGTAGAATTGAGAGACTGGTTATTTGCCCTTGAAGATACACAAGAGACAGCTGAAAGATGGTGGTTCTCCAGCCATGAAGATGAAGACAGAGAAGAGAAGAGTTGGCATGCATCTTTCCATAGTTTACGATTAAATGCAAAAAGTAGCCCACCAAATGTTCCAGATGGAAAAGTACAAGTGCAAAGAATGAAACAACATCCAGTAGAACTGATTACGGTCGGAGTTCAAGGTCTGCAGATCTTGAAGCCTCATTTACAAAAGGACTTTCCTTCATCAGTGCTAATTGCAAATGGGGGTAAAGAATTCCCCGATGCAGTTGGAGGAATTGGTGTTGAAGTTCGCTTGATTTTAGGTGGGGAGAATGTCGATGATGAAATGGCTAATTGGGAAGTGGAAAACCTAAAATTCTCTGTCAAACAACCGATTGAGGCAGTTGTAACAAAGGACGAAGTTCAGCACCTTACTTTTCTGTGCAAATCTGAAATTGACTCAATTGGCCGGATAACTGCTGGAGTTATACGGTTGCTGAAGTTAGAAGGTTCTATTGGTCAGTCTGTTATAGATCAACTTGGGCACCTAGGAAGTGAAGGCATTGACAAGATTTTCTCTCCGGAAAAGGTTAGCAGAGACGGAAGTGTTTATAGTAGAGGAATTTCTCCTCTGCCAAATCTCATAAATGAGGAACCGCACAGAAGTTCGGAACAAACATTAACTTTGCTTGAGGAAACACTTGTGGAATCACAGGGTAAACTTGATGATTTAATTAGTGATATTGGTACTTCTGAGTCTTCCTCTCAACACCTTACCATACTCCAACTGAGTCAAAAGATAGAGACTATGCATGACTTATTGATGCAATTACGGAATCAACTTTAA 3639 0.4235 MESILGRALEYTLKYWLKSFSREQFKLQGRTVHLSNLDIDGDALHSSIGLPPALNVASAKVGKLEITLPSVSNVQTEPIVVQIDRLDLVLEENSDFDASLSSNCSTPSAASAKGSGYGFADKIADGMTIQIQTVNLLLETCGGSRRQGGATWAPPMASITIRNLLLYTTNENWQVVNLKEAREFSSNKKYIYVFKKLEWQSLSIDLLPHPDMFTEATLDHSEEGSNFRDDDGAKRVFFGGERFIEGISGEAYITIQRTELNSPLGLEVQLHINEAVCPALSEPGLRALLRFMTGVYVCLNRGDVDSKRSTEAAGRSLVSIVVDHIFLCIKDTEFQLELLMQSLFFSRASLSEGDNDNNLTRITIGGLFLRDTFCSPPCILVQPSMQAGTRDAFRVPEFARSFCPPIYPLQEQQWQLIEGTPLICLHALKIMPSPLPPSFASETVIDCQPLVIHLQEESCLRISSFLADGIVVNPGDILPDFSVKSFIFNLKGLDLTVPFDKTKLDSSKNDMDNAVQTSFSGARLHIESLFFLNSPSLKLRMLNLEKDPACFSLWEGQPIDASQEKWTARASQLTLFLEASIDGPGCQNSLGQTAGLWRCVDLKDACIEVAMATADGSPLLQVPPPGGIVRVGVACEQYLSNTSIEQLFFVLDLYGYFGSVSEKIAMAGKRKQLEDIRDKSFGGKLMDKVPSDAAVSLSVKNLQLRFLESSSVNIEGMPLVQFLGDDLFTSVTHRTLGGAIIVSSILRWESVEISCVDAEGLLPCEKSSFLCSKENAPSLSDNGYPQLRTVFWVHKNEKHLSNGSAHSVPFLDICMEHVIPLYDQDLESHSLNVSASVSGVRLGGGMNYAEALLHRFGILGPDGAPGMGLCKGLENLQKGPLSKLFKATPLIVNDSEDVRSMIEGNEATFPQLKKPDDVDVTVELRDWLFALEDTQETAERWWFSSHEDEDREEKSWHASFHSLRLNAKSSPPNVPDGKVQVQRMKQHPVELITVGVQGLQILKPHLQKDFPSSVLIANGGKEFPDAVGGIGVEVRLILGGENVDDEMANWEVENLKFSVKQPIEAVVTKDEVQHLTFLCKSEIDSIGRITAGVIRLLKLEGSIGQSVIDQLGHLGSEGIDKIFSPEKVSRDGSVYSRGISPLPNLINEEPHRSSEQTLTLLEETLVESQGKLDDLISDIGTSESSSQHLTILQLSQKIETMHDLLMQLRNQL* 1213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0946 1212 Coils Coil 1191 1211 - -
Pvu5g0946 1212 Pfam N-terminal region of Chorein or VPS13 1 98 IPR026854 -
Pvu5g0946 1212 PANTHER UNCHARACTERIZED 1 1211 IPR026728 -
Pvu5g0946 1212 PANTHER AMINO-TERMINAL REGION OF CHOREIN, A TM VESICLE-MEDIATED SORTER 1 1211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0946 Pvu-Chr5 26304454 26313554 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0946 - - gmx:100811661 2166.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0946 5 26304454 26313554 Pvu5g0946 5 26304454 26313554 ECH
Pvu5g0946 5 26304454 26313554 Pvu11g1460 11 33604071 33606617 PCT