Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0866 ATGGCCCTCCAAGCTGCTTCTCTTGTTCCTGCTTCTTTCTCTGTCCCTAAAGAGGGAAAGAGTTGTGTTTCTCTCAAGGACTCCACACTGTTCGGTCTTTCATTGTCAGAACCTAGCAAAGCTGACTTCAGCTCCTCTGCATTGAGGTGCAAGAGGGAATTCCAGCAAAAAATTGGTGCTGTGAGGGCGGAGACAGTGGCTACAGCCTTTCCAGCAGTCACCAAGTCTACACCAGAAGGCAAGAAAACACTGAGGAAAGGTAGTGTTGTGATAACTGGGGCTTCCTCTGGATTAGGCCTGGCCACTGCTAAGGCTTTGGCTGAGACAGGAAAATGGCATATAATAATGGCCTGCAGGGATTACCTCAAAGCTGCAAGAGCTGCAAAATCTGCTGGCATGGCTAAGGAAAACTACACCATCATGCACTTGGACCTTGCCTCTCTTGACAGTGTCCGCCAATTTGTTGATAACTTCAGAAGATCAGAAATGCCACTAGATGTGTTGGTTTGCAATGCTGCCGTTTACTTGCCAACTGCTAAGGAACCTACATTCACTGCTGAAGGCTTTGAACTTAGTGTTGGAACAAACCATCTAGGACATTTCCTCCTTGCTCGCTTGTTGCTTGAGGACTTGAGAAAATCTGATTACCCTTCAAAGCGCATGATCATTGTTGGTTCAATTACTGGGAACACCAACACATTGGCTGGTAATGTACCTCCCAAGGCTAACCTTGGTGACTTGAGGGGACTTCAGGGTGGTTTGAATGGGCTAAACAGTTCAGCCATGATTGATGGTGGAGACTTTGATGGTGCCAAGGCATACAAGGACAGCAAAGTATGTAATATGCTCACAATGCAAGAATTCCACAGACGATACCACGAGGAAACTGGAATCACGTTCTCATCGCTCTACCCCGGTTGCATTGCCACAACCGGCTTGTTCAGAGAGCACATTCCCTTGTTCAGAACTCTATTCCCTCCATTCCAGAAGTACATAACCAAAGGCTATGTCTCGGAAGATGAAGCAGGAAAGAGACTTGCTCAGGTTGTGAGTGATCCAAGCCTTACAAAATCTGGTGTTTACTGGAGCTGGAATAAAACATCTGCTTCATTTGAGAACCAGTTGTCACAGGAGGCCAGTGATGTTGAAAAGGCTCGTAAGGTGTGGGAGATTAGTGAGAAGCTCCTTGGTTTGGCCTAA 1200 0.4675 MALQAASLVPASFSVPKEGKSCVSLKDSTLFGLSLSEPSKADFSSSALRCKREFQQKIGAVRAETVATAFPAVTKSTPEGKKTLRKGSVVITGASSGLGLATAKALAETGKWHIIMACRDYLKAARAAKSAGMAKENYTIMHLDLASLDSVRQFVDNFRRSEMPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLARLLLEDLRKSDYPSKRMIIVGSITGNTNTLAGNVPPKANLGDLRGLQGGLNGLNSSAMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFSSLYPGCIATTGLFREHIPLFRTLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKTSASFENQLSQEASDVEKARKVWEISEKLLGLA* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0866 399 Pfam short chain dehydrogenase 89 231 IPR002347 -
Pvu5g0866 399 PRINTS Glucose/ribitol dehydrogenase family signature 88 105 IPR002347 -
Pvu5g0866 399 PRINTS Glucose/ribitol dehydrogenase family signature 163 174 IPR002347 -
Pvu5g0866 399 PRINTS Glucose/ribitol dehydrogenase family signature 296 313 IPR002347 -
Pvu5g0866 399 PANTHER NADPH-PROTOCHLOROPHYLLIDE OXIDOREDUCTASE 1 397 - -
Pvu5g0866 399 PANTHER - 1 397 IPR005979 GO:0016630
Pvu5g0866 399 CDD LPOR_like_SDR_c_like 86 398 - -
Pvu5g0866 399 Gene3D - 74 398 - -
Pvu5g0866 399 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 84 366 IPR036291 -
Pvu5g0866 399 TIGRFAM LPOR: light-dependent protochlorophyllide reductase 85 399 IPR005979 GO:0016630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0866 Pvu-Chr5 20215832 20218578 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0866 K00218 - gmx:100785637 720.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0866 5 20215832 20218578 Pvu5g0866 5 20215832 20218578 ECH