Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0860 ATGGGAGACCGTTGTAGACATTTTTCCATTGAGGAATTGCCATCACATTTGGTTTTAGATATTCTGTGCTCGGGTAGGCTCAGTGCAATGGACCTTGTTTGCTTAGAATTGACTTCCAAAACTTTTGGTGGTATTCATGGCTTGTACCCTTTCAAATTTAAGTCCTTGATTGACTTTGCTGCATTTCAATTGTGTGCCTCCCATGTTACATATGCTGGGATGAGTTTGATTTCTCAGAGGGAGTTGTATGACAGATGTGGAGGAAATTGGAAGCGAGTTTTGAGGTTCTTGCAGTCTGTGGAACAATCCTCTCAGATGGTCGAGACATCATCAGGCAATATGCAAATAACAACTGGAAAGTATCACACCTTGTTGATCAGCAATGCTTCTGTCTATTCCTGTGGTTCTTGTTTATGTGGAGTACTTGGTCATGGGTCTGAAATAACACAGTGTGTAGCATTTACCCGGATTAATTTCCCACCTTTGGCACGTGTGGTTCATGTTTCAGCCTCCTTTAATCATGCAGCTTTTGTCTTGCAATCTGGAGAGGTATTCACATGTGGAGATAATTCAGCTTCTTGCTGTGGACACAGAGATACTAGCCGACCAATTTCCAGGCCTCGTCTTGTTGAATCCCTTAAGGGGATTCCTTGCAAACAGGTTGCGGCGGGGCTTAACTTCACAGTTTTCCTCACCAGACAAGGTCATGTTTATACATGTGGAACCAACACACATGGCCAACTTGGTCATGGTGACACTCAGGACAGGCCAACCCCCAAAATGATTGAAGTTCTTGGATCTGTTGTTCAGATTGCTGCAGGACCAAGCTATATCTTATCCGTAACAGAAAATGGAACAGTGTACTCCTTTGGGTCAGGTGCAAATTTCTGTCTTGGCCATGGTGAGCAACACAATGAGTTTCAGCCACGTGCTGTACAGAAATTCAGACGGAAAGGTATTCATATTGTCCGTGTATCTGCTGGGGATGAGCATGCAGTGGCCCTTGACTCAAATGGATTTGTATATACATGGGGCAAGGGATACTGTGGTGCTTTAGGCCATGGCGATGAGATTGAGAAGACAACTCCAGAGATGTTAACTAGTCTTAAGAATCAACTGGCTGTTCAGGTCTGTGCAAGGAAGAGGAAAACATTTGTGCTAATTGATTCTGGTTTAGTCTATGGCTTTGGCTCCATGGGATTTGGCAGCCTCGGATTCCTGGACAGAAGGGTATTAGATAAAGTATTGAAACCTCGAATCTTAGATACCTTGAAATCTCACCATGTTTCTCAAATTAGCACTGGCTTGTTCCACACTGTGGTGATCACTAGCAGGGGAAAGATATTTGGCTTTGGAGATAATGAAAGAGCACAACTTGGTCACGACACATTAAGAAGCTGCCTTGAGCCAACTCAAATTTTCAATAGAGGCATCTGA 1437 0.4363 MGDRCRHFSIEELPSHLVLDILCSGRLSAMDLVCLELTSKTFGGIHGLYPFKFKSLIDFAAFQLCASHVTYAGMSLISQRELYDRCGGNWKRVLRFLQSVEQSSQMVETSSGNMQITTGKYHTLLISNASVYSCGSCLCGVLGHGSEITQCVAFTRINFPPLARVVHVSASFNHAAFVLQSGEVFTCGDNSASCCGHRDTSRPISRPRLVESLKGIPCKQVAAGLNFTVFLTRQGHVYTCGTNTHGQLGHGDTQDRPTPKMIEVLGSVVQIAAGPSYILSVTENGTVYSFGSGANFCLGHGEQHNEFQPRAVQKFRRKGIHIVRVSAGDEHAVALDSNGFVYTWGKGYCGALGHGDEIEKTTPEMLTSLKNQLAVQVCARKRKTFVLIDSGLVYGFGSMGFGSLGFLDRRVLDKVLKPRILDTLKSHHVSQISTGLFHTVVITSRGKIFGFGDNERAQLGHDTLRSCLEPTQIFNRGI* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0860 478 Gene3D - 265 476 IPR009091 -
Pvu5g0860 478 Gene3D - 86 264 IPR009091 -
Pvu5g0860 478 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 285 338 IPR000408 -
Pvu5g0860 478 SUPERFAMILY RCC1/BLIP-II 124 475 IPR009091 -
Pvu5g0860 478 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 235 284 IPR000408 -
Pvu5g0860 478 Pfam Regulator of chromosome condensation (RCC1) repeat 284 335 IPR000408 -
Pvu5g0860 478 Pfam Regulator of chromosome condensation (RCC1) repeat 235 275 IPR000408 -
Pvu5g0860 478 Pfam Regulator of chromosome condensation (RCC1) repeat 181 231 IPR000408 -
Pvu5g0860 478 Pfam Regulator of chromosome condensation (RCC1) repeat 338 379 IPR000408 -
Pvu5g0860 478 PANTHER BNAA01G28890D PROTEIN 9 474 - -
Pvu5g0860 478 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 432 442 IPR000408 -
Pvu5g0860 478 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 391 445 IPR000408 -
Pvu5g0860 478 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 182 234 IPR000408 -
Pvu5g0860 478 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 9 474 - -
Pvu5g0860 478 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 325 335 IPR000408 -
Pvu5g0860 478 Pfam Regulator of chromosome condensation (RCC1) repeat 429 457 - -
Pvu5g0860 478 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 339 390 IPR000408 -
Pvu5g0860 478 PRINTS Chromosome condensation regulator RCC1 signature 286 302 IPR000408 -
Pvu5g0860 478 PRINTS Chromosome condensation regulator RCC1 signature 322 335 IPR000408 -
Pvu5g0860 478 PRINTS Chromosome condensation regulator RCC1 signature 341 357 IPR000408 -
Pvu5g0860 478 PRINTS Chromosome condensation regulator RCC1 signature 432 448 IPR000408 -
Pvu5g0860 478 PRINTS Chromosome condensation regulator RCC1 signature 448 462 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0860 Pvu-Chr5 20044932 20054753 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0860 - - gmx:100782653 900.968
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0860 5 20044932 20054753 Pvu5g0860 5 20044932 20054753 ECH