Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0790 ATGGCTACGCACACACCAAAAAATATCCTCATTACTGGAGCTGCTGGATTCATTGCATCTCATGTTGCCAACCGGCTTATCCGGAATTATCCCCAGTACAAAATTGTTGTTCTTGACAAGCTTGATTATTGTTCAAATCTGAAGAACCTCATTCCTTCAAAATCATCTCCCAACTTCAAGTTTGTGAAGGGAGATATTGGAAGTGCTGATCTTGTCAACTACCTACTCATTACCGAGTCCATTGACACAATAATGCACTTTGCTGCTCAAACTCATGTTGACAACTCATTTGGCAACAGCTTTGAGTTCACCAAGAACAACATATATGGAACTCATGTCCTTTTAGAAGCCTGCAAGGTAACTGGTCAGATCAAGAGGTTCATCCATGTGAGCACTGATGAGGTCTATGGAGAGACAGATGAGGATGCTATTGTTGGAAACCACGAGGCTTCTCAGTTACTTCCCACGAATCCTTACTCTGCAACAAAAGCTGGGGCAGAAATGCTTGTCATGGCATATGGCAGGTCATATGGTTTACCTGTGATCACAACACGTGGGAACAATGTTTATGGGCCCAATCAGTTTCCTGAGAAGTTAATTCCAAAGTTCATTCTCCTGGCTATGCAAGGCAAGCCTCTTCCAATCCATGGGGATGGTTCTAATGTAAGGAGTTACTTATATTGTGAAGATGTTGCAGAGGCTTTTGAACTTATCCTTCACAAGGGAGAGGTTGGGCATGTTTACAATATTGGTACTAAGAAGGAGAGGAGAGTTATTGATGTTGCCAAAGATATATGCAGGCTTTTTAAGATGGACTCAGAAGCTAGTATAAAATTTGTGGAGAACAGACCATTTAATGATCAGAGATACTTTCTTGATGATGAAAAGCTGAAGGTCTTGGGTTGGTCTGAGAGGACCACTTGGGACGAGGGCTTGAAGAAAACCATGGACTGGTATATCAACAATCCTGGTTGGTGGGGTGATGTCAGTGGTGCATTGCTTCCTCATCCAAGGATGCTGATGATGCCCGGTGGATTGGAGAGACATTTTGATGGATCTGAAGAAGAAATACATGCATCATATGTCTCAACTAATACTCGAATGGTGGTTCCAACATCCAAGAATGTTACCTCTTCTCAGAAGCATCCTCTCAAGTTCTTGCTTTATGGAAGAACAGGTTGGATTGGGGGTTTGCTTGGGAAATTGTGTGAAAAGCAAGAGATTCCCTATGAATATGGAAGAGGGCGCCTAGAGGATCGTTCATCACTTGTGGCTGATATTCAGAATGTGAAGCCTACACACATTTTTAATGCTGCAGGAGTGACTGGCAGACCCAATGTTGATTGGTGTGAATCCCACAAAACAGAAACCATTCGCACCAACGTTGCTGGGACTTTAACATTGGCTGATGTCTGCAGAGAGCATGGTATCTTGATGATAAATTATGCTACTGGGTGCATATTTGAGTACGATGAAGCTCATCCACAGGGTTCTGGCATTGGCTTTAAGGAGGAAGACAAACCCAATTTCATTGGTTCTTTCTATTCCAAAACTAAGGCTATGGTTGAAGAGCTCTTGAGAGAATATGACAATGTGTGCACCCTCAGAGTTCGCATGCCAATTTCATCTGACTTGAGTAATCCACGTAACTTCATCACCAAGATTTCTCGTTATAACAAAGTCGTGAACATTCCAAACAGCATGACCATTTTGGATGAACTTCTGCCTATTTCGATTGAGATGGCGAAGCGAAACTTGAGGGGCATCTGGAACTTCACAAATCCTGGGGCAGTGAGCCACAATGAGATTCTTGAGATGTACAGGGATTACATTGATCCAAGCTTCAAGTGGGTTAACTTCAACCTTGAAGAGCAAGCCAAGGTGATCGTAGCTCCACGGAGCAACAATGAGATGGATGGAGCCAAATTGAAGAAAGAGTTCCCTGAGCTTCTTTCCATCAAGGATTCACTGATCAAGTATGTCTTTGAGCCAAACAAGAAAACTGCTTAA 2010 0.4279 MATHTPKNILITGAAGFIASHVANRLIRNYPQYKIVVLDKLDYCSNLKNLIPSKSSPNFKFVKGDIGSADLVNYLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIKRFIHVSTDEVYGETDEDAIVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMQGKPLPIHGDGSNVRSYLYCEDVAEAFELILHKGEVGHVYNIGTKKERRVIDVAKDICRLFKMDSEASIKFVENRPFNDQRYFLDDEKLKVLGWSERTTWDEGLKKTMDWYINNPGWWGDVSGALLPHPRMLMMPGGLERHFDGSEEEIHASYVSTNTRMVVPTSKNVTSSQKHPLKFLLYGRTGWIGGLLGKLCEKQEIPYEYGRGRLEDRSSLVADIQNVKPTHIFNAAGVTGRPNVDWCESHKTETIRTNVAGTLTLADVCREHGILMINYATGCIFEYDEAHPQGSGIGFKEEDKPNFIGSFYSKTKAMVEELLREYDNVCTLRVRMPISSDLSNPRNFITKISRYNKVVNIPNSMTILDELLPISIEMAKRNLRGIWNFTNPGAVSHNEILEMYRDYIDPSFKWVNFNLEEQAKVIVAPRSNNEMDGAKLKKEFPELLSIKDSLIKYVFEPNKKTA* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0790 669 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 332 IPR036291 -
Pvu5g0790 669 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 1 666 - -
Pvu5g0790 669 Pfam RmlD substrate binding domain 385 555 IPR029903 -
Pvu5g0790 669 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 377 615 IPR036291 -
Pvu5g0790 669 CDD dTDP_HR_like_SDR_e 385 657 - -
Pvu5g0790 669 Pfam GDP-mannose 4,6 dehydratase 10 315 IPR016040 -
Pvu5g0790 669 Gene3D - 200 322 - -
Pvu5g0790 669 PANTHER TRIFUNCTIONAL UDP-GLUCOSE 4,6-DEHYDRATASE/UDP-4-KETO-6-DEOXY-D-GLUCOSE 3,5-EPIMERASE/UDP-4-KETO-L-RHAMNOSE-REDUCTASE RHM1-LIKE 1 666 - -
Pvu5g0790 669 Gene3D - 9 313 - -
Pvu5g0790 669 CDD dTDP_GD_SDR_e 7 323 IPR005888 GO:0008460|GO:0009225
Pvu5g0790 669 Gene3D - 373 669 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0790 Pvu-Chr5 15184246 15188010 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0790 8 321 Miscellaneous Gene Families AT4G00110 27.083 7.68e-21 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0790 K12450 - gmx:100775641 1322.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0790 5 15184246 15188010 Pvu5g0790 5 15184246 15188010 ECH