Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0751 ATGTTGGCTAGACGGGCATCACTAAAGCGGGAGACTCTCCATACAGATTTTCTAACCCCTCCAGTGCTAAAGGAATCTATGTTAGTTTTGGAAAAATTAGCAGATGTGAAAGCAATTTCTCAAGGAGGTTATGCTCAGGCTGAACGTTGTCGGATTTCTGTTGGACATCCAGAAGAACTGACTAGTGATCCAGATATTATTTCAGCATTAAGCATTAAAGGGAACTTCCAGTTTGAACCTTGCTCACATGGTGACTTCCTTGGCTCAATCCTTGGTACAGGAATTGTCAGGGAGAAACTTGGGGATATTATATTGCAGGGAGAACAGGGTGCACAGATAGTTGCTGTGCCAGAACTGGTTGAATTTCTCATGTCAACCTTGGTTAAGGTTCGTAATGTTCCTGTAACTTGCACCAAGATACTATTGATTTCTCTTGATTATGAACCACCAAGAACAAAATCATTCAAAACTATAGAAGCATCGCTAAGAGTTGATGCTCTTGCTAGCGCTGGATTTAAGATTTCACGTTCAAAACTAGTTAACATGATCAGCAATGGTGATGTGTGTGTCAACTGGATCCCTGTTACTACCAAAGGAACCACACTCAAGAGTGGAGATATTATATCAGTTAGTGGAAAGGGAAGATTAAAGATAGGAGAAATAAACTCCACAAAGAAAGGGAAGTTTGCAGTGGAGCTCATTCTGTATTTGTAG 714 0.4062 MLARRASLKRETLHTDFLTPPVLKESMLVLEKLADVKAISQGGYAQAERCRISVGHPEELTSDPDIISALSIKGNFQFEPCSHGDFLGSILGTGIVREKLGDIILQGEQGAQIVAVPELVEFLMSTLVKVRNVPVTCTKILLISLDYEPPRTKSFKTIEASLRVDALASAGFKISRSKLVNMISNGDVCVNWIPVTTKGTTLKSGDIISVSGKGRLKIGEINSTKKGKFAVELILYL* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0751 237 TIGRFAM PS_II_S4: photosystem II S4 domain protein 2 234 IPR017506 -
Pvu5g0751 237 Gene3D - 156 213 IPR036986 GO:0003723
Pvu5g0751 237 CDD S4 163 217 - -
Pvu5g0751 237 Gene3D - 63 144 IPR012677 -
Pvu5g0751 237 ProSiteProfiles S4 RNA-binding domain profile. 162 222 - -
Pvu5g0751 237 Pfam S4 domain 166 208 IPR002942 GO:0003723
Pvu5g0751 237 PANTHER RNA-BINDING PROTEIN YLMH-RELATED 3 237 - -
Pvu5g0751 237 Pfam Putative RNA-binding domain in YlmH 67 140 IPR040591 -
Pvu5g0751 237 SMART s4_6 162 222 IPR002942 GO:0003723
Pvu5g0751 237 PANTHER RNA-BINDING PROTEIN YLMH-RELATED 3 237 - -
Pvu5g0751 237 SUPERFAMILY Alpha-L RNA-binding motif 43 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0751 Pvu-Chr5 12344980 12348061 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0751 - - pvu:PHAVU_005G072600g 459.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0751 5 12344980 12348061 Pvu5g0751 5 12344980 12348061 ECH