Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0707 ATGAGAACCATGTCAAAAGTTGGATGCTTCACTTTGTTTGCTTTCTTAGTGGCACTTCATGTCGAGTGCCGTTGTCTTCGCCCTAGTGTTTCTGATGGGGTTGACGCTGTTCAATCCCATGAGGCTTATTTGCAACTCATAGACCAAAAGATTGAATCTTCTTCTGATGGGCATTACTGTAAGCAAATGTACGGATTCTTGCCTTGTTCCAGTAACATACTTGGCCATCTTTTCCTCATTTTGGTTTATGAGTATTTGTTGTTCCATGGAGAGTCATATTTGGCTACTGGAGGTGAGCAAATCTTCAAGATTCTTGGCCCTGGCGTTTTTGGTGCTAGTGCCTTTGATATTCTTGGGGCACTTCCTGAGTCCTTAATTCTTCTTGTTACTGGAATTTCCAGTGACAAGGAGAGTGCACAAGAGTATGCTTCCACTGGTGTCGGTTTGTTGGCGGGATCATCCATCTTCCTTCTAACTGTAGTGTGGGGAACATGTGTTATCATTGGCAAGCAAGAGATCATAAATGACTCTAACTCGGATGACTTACATTCATGGAGTACAGGAATAAAAAAATCACTAACTGGTTATGGTATCACTATGGATGTAGATACTAGAGAGATGGCAATAATCATGGTTTTGTCAACTATACCACTTATCATAATGCAGATTCCCCGTTTCTTCCACTTATCTTCTGCAGCACGTAATGTGACTTTGATGGTTGCTCTTATAGTAGCTGTTACTTTTCTTATCTCTTACTTCATTTACCAGGTGTTTAAACCTCAGATAGAGAAAACTAGACTGGAGTATATTAAGCATCATGACTTAATATTAAGAATTTTTGAACGTGTTGAGAAACAAACTCTGCAAAAGATCCTGGCCGAGGATGGAACTCCCAATGTGGCTGCAATAAGTGGGTTGTATCATGAAATTAGTCAGCACGGGGGCAATGACTTGTTAGCTTCTGAAGTGAGAGAACTCTTGTTTGGGAACAAAATGACGGACACAAATATCAAAGAAGAACAGATAGCAGATTTGTTAAAAGCTTTTGACAGAAATGGTGACCAAATTATAACCAAGGAAGAGTTTGTCACTGGTTTAACAGAATACATTAACCAAACAAAGCATGCCTTGGATAGACAATACCTTCCAAAAGAATCTTTGAGCAATATGTATAAGACTTTTATTAAGCCATGGATTGAACACGCGAGAAAGGAACGTGAATTGAAGAAACATCTTATATCTGAAGTCTTAAAGCATGCTCAGAATGATATGGTTGGCAGGCTGCAAAATGATAATGGTACACCTGACAAAGCTGCAATCAAAAGGTTGTTTGAGGAAATTGATGTCAACAAGGATAACCACATTTCAAGATCTGAATTGGAAAAGGTAGTCAAGGACATCCAGTTTAACAAGTTTGTAGATGCTGAGGAGGCAGTTACAAAACTTGCTCAAGATCTTGATCTCAACGGAGACGATGAAATTAGTAAGACCGAGTTCATTGAAGGTCTTACAAAATGGATGAACTCAGATTCCAGCCGAGCTGCTAACTCAAAATCTTCATCTCAGGGAATTCATAAAACCTGGGAAGATGTTGAAAAGGTAATGGAAGAGAATCAAACCAATGGGACTTCTGCATGGTTGACGGCCATAGGATATGTGGTATTGGGGGTTACTATGCTGGCTCTTCTAGCAGAACCCTTAATAGCAAGTGTTCAAAAATTCTCTGAAGAAGCAGGAATTTCATCGTTTTTCATCTCATTCATTTTGGTCCCCCTGGCTACAAATTTTAGAGAAGCAACCTCAGCAATCAAAGAAGCTGGCCATAAGAAGAGAAGTAATACTTCTCAGACAATATACGAGATTTATGGAGCAGTGTTCATGAACAACATTCTTGGCTTTGTGGTGATTTCTATTCTCATATACGTGCGTGAGATCAGTTGGCAATTCTCAGCTGATGTACTGGTTGTGGCAATAGTTTGTGCAGTAATGGGCCTCACTGCTCGTTTTCGCCCCACTTTTCCTCTTTGGACATCCTTCGCTGCATACTTCATGTACCTAATAGCATTGCTCTTGGTTTTTGTCCTCAAAGATGTTCTCAATTATGTTTAA 2109 0.3983 MRTMSKVGCFTLFAFLVALHVECRCLRPSVSDGVDAVQSHEAYLQLIDQKIESSSDGHYCKQMYGFLPCSSNILGHLFLILVYEYLLFHGESYLATGGEQIFKILGPGVFGASAFDILGALPESLILLVTGISSDKESAQEYASTGVGLLAGSSIFLLTVVWGTCVIIGKQEIINDSNSDDLHSWSTGIKKSLTGYGITMDVDTREMAIIMVLSTIPLIIMQIPRFFHLSSAARNVTLMVALIVAVTFLISYFIYQVFKPQIEKTRLEYIKHHDLILRIFERVEKQTLQKILAEDGTPNVAAISGLYHEISQHGGNDLLASEVRELLFGNKMTDTNIKEEQIADLLKAFDRNGDQIITKEEFVTGLTEYINQTKHALDRQYLPKESLSNMYKTFIKPWIEHARKERELKKHLISEVLKHAQNDMVGRLQNDNGTPDKAAIKRLFEEIDVNKDNHISRSELEKVVKDIQFNKFVDAEEAVTKLAQDLDLNGDDEISKTEFIEGLTKWMNSDSSRAANSKSSSQGIHKTWEDVEKVMEENQTNGTSAWLTAIGYVVLGVTMLALLAEPLIASVQKFSEEAGISSFFISFILVPLATNFREATSAIKEAGHKKRSNTSQTIYEIYGAVFMNNILGFVVISILIYVREISWQFSADVLVVAIVCAVMGLTARFRPTFPLWTSFAAYFMYLIALLLVFVLKDVLNYV* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0707 702 ProSiteProfiles EF-hand calcium-binding domain profile. 474 509 IPR002048 GO:0005509
Pvu5g0707 702 ProSitePatterns EF-hand calcium-binding domain. 350 362 IPR018247 -
Pvu5g0707 702 Gene3D - 297 377 - -
Pvu5g0707 702 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 547 701 - -
Pvu5g0707 702 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 394 523 - -
Pvu5g0707 702 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 10 385 - -
Pvu5g0707 702 SUPERFAMILY EF-hand 326 509 IPR011992 -
Pvu5g0707 702 CDD EFh 440 504 IPR002048 GO:0005509
Pvu5g0707 702 Pfam Sodium/calcium exchanger protein 550 693 IPR004837 GO:0016021|GO:0055085
Pvu5g0707 702 Pfam Sodium/calcium exchanger protein 90 258 IPR004837 GO:0016021|GO:0055085
Pvu5g0707 702 ProSiteProfiles EF-hand calcium-binding domain profile. 337 372 IPR002048 GO:0005509
Pvu5g0707 702 ProSitePatterns EF-hand calcium-binding domain. 487 499 IPR018247 -
Pvu5g0707 702 ProSiteProfiles EF-hand calcium-binding domain profile. 435 470 IPR002048 GO:0005509
Pvu5g0707 702 Pfam EF-hand domain pair 438 501 IPR002048 GO:0005509
Pvu5g0707 702 SMART efh_1 478 506 IPR002048 GO:0005509
Pvu5g0707 702 SMART efh_1 439 467 IPR002048 GO:0005509
Pvu5g0707 702 SMART efh_1 341 369 IPR002048 GO:0005509
Pvu5g0707 702 Gene3D - 378 519 - -
Pvu5g0707 702 ProSitePatterns EF-hand calcium-binding domain. 448 460 IPR018247 -
Pvu5g0707 702 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 547 701 - -
Pvu5g0707 702 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 394 523 - -
Pvu5g0707 702 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 10 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0707 Pvu-Chr5 10888613 10892837 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0707 390 695 EF-hand Containing Proteins AT1G53210 38.462 1.84e-60 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0707 - - gmx:100800452 1152.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0707 5 10888613 10892837 Pvu5g0707 5 10888613 10892837 ECH