Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0706 TCTGGACTTGTGAGCAATAAGGAGACAGCAAAAGAATATGCTATGAGTGGGATTGGCTTATTGGCTGGATCATCCATTTTGCTTCTAACTGTAGTTTGGGGAAGCTGTGTCATTGCTGGCAATCAAGAATTTGAGCATCATTCTCCTCCTTCTAACTCACATCACAAAACTATTAAAACCTTCTTCACTGGTTATGGAATTACTACGGATTTGGAAACCAGTTACAGTGCAAGAATCATGGTTTGCTCAGTGATACCATTTGCAATCATGCAAGTCCCAAATTTATTCCATTTCTCTTCTGGGCTAAGAAACGTGACCTTACTAATTGCTCTCATCATTACCTCCATTCTTCTCTTCCTGTACTTCGCTTATCAGATTTTTGAACCATGGGTACAGAAAAGGAGATTGGAATATGTGAAACACGATCATTTAATATTGAGAATATTACAACATGTTCAAAAGAACACCCTGCAAAGGATCTTCACAAAGAATGGGACTCCAAATGTCAGTGCCATAAGGCGATTATATAGGGAAATAGATCAAGATGGGAGCAGTGGTATATCAGCTTCTGAGGTTAAAGATCTTCTGCTCAAAAACAAAGTTACTGAAACCAATTTCGATGAGGAGAGAGAAGTAAAAGAGGTGTTACAAATTTTTGACCTGGATGGTGACAAAAAAATAAACAAAGAGGAATTTGTTAGTGGCTTCACAAAATGGCTTCATCAAACACAACATGCTTTAGAGAAACAGTATTTTTCAATGAAATCACTGAAAAATATATATCAGGTTTTTGGACCATGGATTGAAAACAAAAGAAAAGAACGTGAAGGAAAGAAACAGCTTATATGTGAAATCTTGAAGCTTGTTCAGAGTGATGTGATTGGTAGCCTTCTCACAGTAGATGGAAAACCTGATGAACATGCTATCAGAGGGTTGTTTCTGAAAATTGATCGCAATAGAGATAACTTCATTTCCCAATCTGAGTTGAGAGAACTAATCATGAACATCAAGTTTGTCAAAGCATCAATGGAAGTGGAAGAAGCAGTAGCTCTTGTCATCAAAGAACTTGACATTGATAACGACCGCATAATTAATGAGGATGAATTTGTTGCTGGGTTTCACAAATGGCTTAGCTCAACTTCAGCTCCTGCTCCAGTGTCACATTCTGAGTCTCAAGAAGATATGTATCAGACCTGGGAAGAGGCTGACATGGTGGTAGAAGAGAGGCAAAGGAAAGCAGTTGTTGATAAATCAACATGGGCATGGTTTAAGGCCATATTGTATGTGATGCTAGGAATTGTTATGCTATCCATTTTGACAGAGCCTCTAACAGAAAGTGTCCACAACTTCTCTAACAGTGTAGGACTTCATCCATTCTTCATGTCGTTTATTCTAGTCCCCTTGGCCACAAATGCTAGAGAAGCAACTTCAGCAATCAAAGAAGCAAGCCATAAGAAGCCAAGAACCACTTCTCTTGCCATTTCTGAGATTTATGGAGGGGTGTTCATGAATAACATTCTTGGCTTCTTTGCAATCTCAGTTCTGATCAGTGTGGGACAAGTCACTTGGCAATATTCAGCTGAATTGCTGGTTGTTGGTATTGTTTGTGCTATAGCAGGCTTAACTGCAAGTTTTCTCTCCATTTTTCCTCTATGCTCATCATTCTTCGCAATCCTCTTGTACCCATTGTCCTTGGTTTTGGTTTTTGTACTTGACCAAGTTCTTCGTTATAATTAA 1737 0.3869 SGLVSNKETAKEYAMSGIGLLAGSSILLLTVVWGSCVIAGNQEFEHHSPPSNSHHKTIKTFFTGYGITTDLETSYSARIMVCSVIPFAIMQVPNLFHFSSGLRNVTLLIALIITSILLFLYFAYQIFEPWVQKRRLEYVKHDHLILRILQHVQKNTLQRIFTKNGTPNVSAIRRLYREIDQDGSSGISASEVKDLLLKNKVTETNFDEEREVKEVLQIFDLDGDKKINKEEFVSGFTKWLHQTQHALEKQYFSMKSLKNIYQVFGPWIENKRKEREGKKQLICEILKLVQSDVIGSLLTVDGKPDEHAIRGLFLKIDRNRDNFISQSELRELIMNIKFVKASMEVEEAVALVIKELDIDNDRIINEDEFVAGFHKWLSSTSAPAPVSHSESQEDMYQTWEEADMVVEERQRKAVVDKSTWAWFKAILYVMLGIVMLSILTEPLTESVHNFSNSVGLHPFFMSFILVPLATNAREATSAIKEASHKKPRTTSLAISEIYGGVFMNNILGFFAISVLISVGQVTWQYSAELLVVGIVCAIAGLTASFLSIFPLCSSFFAILLYPLSLVLVFVLDQVLRYN* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0706 578 ProSitePatterns EF-hand calcium-binding domain. 357 369 IPR018247 -
Pvu5g0706 578 ProSiteProfiles EF-hand calcium-binding domain profile. 344 379 IPR002048 GO:0005509
Pvu5g0706 578 ProSitePatterns EF-hand calcium-binding domain. 220 232 IPR018247 -
Pvu5g0706 578 CDD EFh 172 237 IPR002048 GO:0005509
Pvu5g0706 578 SUPERFAMILY EF-hand 171 374 IPR011992 -
Pvu5g0706 578 Pfam EF-hand domain pair 308 371 IPR002048 GO:0005509
Pvu5g0706 578 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 252 - -
Pvu5g0706 578 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 260 383 - -
Pvu5g0706 578 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 419 573 - -
Pvu5g0706 578 Gene3D - 124 249 - -
Pvu5g0706 578 ProSiteProfiles EF-hand calcium-binding domain profile. 207 242 IPR002048 GO:0005509
Pvu5g0706 578 ProSitePatterns EF-hand calcium-binding domain. 317 329 IPR018247 -
Pvu5g0706 578 SMART efh_1 308 336 IPR002048 GO:0005509
Pvu5g0706 578 SMART efh_1 211 239 IPR002048 GO:0005509
Pvu5g0706 578 SMART efh_1 348 376 IPR002048 GO:0005509
Pvu5g0706 578 SMART efh_1 171 199 IPR002048 GO:0005509
Pvu5g0706 578 Pfam Sodium/calcium exchanger protein 426 569 IPR004837 GO:0016021|GO:0055085
Pvu5g0706 578 ProSiteProfiles EF-hand calcium-binding domain profile. 304 339 IPR002048 GO:0005509
Pvu5g0706 578 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 260 383 - -
Pvu5g0706 578 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 1 252 - -
Pvu5g0706 578 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 419 573 - -
Pvu5g0706 578 Gene3D - 399 572 IPR044880 -
Pvu5g0706 578 ProSiteProfiles EF-hand calcium-binding domain profile. 167 202 IPR002048 GO:0005509
Pvu5g0706 578 CDD EFh 309 374 IPR002048 GO:0005509
Pvu5g0706 578 Gene3D - 250 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0706 Pvu-Chr5 10823978 10828115 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0706 260 572 EF-hand Containing Proteins AT1G53210 39.692 5.51e-64 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0706 - - pvu:PHAVU_005G068200g 1115.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0706 5 10823978 10828115 Pvu5g0706 5 10823978 10828115 ECH