Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0705 ATGCCTGCCTCTCTCACTTCCTACCGGTCCATCTTCCTCATCCTTTGGATCGTGATCCTGTGCGGTCACGCTCATGCTCGCTTCTTCTCCCGCGATCCGCTCTCTGATGGCGTCTCCAACAACAGCTGGGAGGGCCTCCTCCGCCTCCCCTCGGCAATCACGGTTGAGTCCTCCTGCGAGCAGACCTACGGCTTCCTACCGTGCACCACCACCGTCTTAGGTAACCTCTTCCTCATCCTCATCTATGGTTTCCTCATGTTCAAGGCCGCCACGTTCCTCTCCGGCGGCAGCGAGCTCCTGCTCGAGATCTTGGGCCCCGGCATTGTTGGCGGCCTCTTCCTCCCCATCCTCGGTGCACTTCCCGATGCCATGCTCATCCTCGTGTCTGGGCTTTCAGGTAGTAAAGAAACTGCTCAAAGTCAGGTATCTGTTGGAATGGGACTGCTAGCTGGGTCCACGGTGCTGCTTCTTACTATAATATGGGGGACCTGTGTAATTGTTGGCAAGTGTGACATCGAGGATTCAATTGCTATAGATTCACAAGACACTAGGGGATTTAGTTTAACTGGTTCTGGTGTTAGTACTGATATCTGGACAAGTTATTCAGCACGGATTATGGTTATATCTGTCCTTCCATTTGTGATCGTTCAATTACCACAAATTCTTAATTCAACATCAGGAAGGCACTTGGCTGTTTTGATAGCCCTCATTGTGTCACTCGGTTTATTGGTTGCTTATTGTCTTTACCAGATTTTCCAGCCCTGGATACAAAGGAGGAAACTTGAATATATTAAACACAAGCATGTTATACTAGGATTTTTAACACATTTGAAGAAACGTGCGTTGGGAAGGCTGCTGAATGATAATGGTGAACCTGATAAAGAAGTCATTAGAAAATTGTTTACAACCATTGATGAAAATCAAGATGGCAGTCTTACTCATAATGAATTGAGAGCACTGGTTATTGGAATTCAGTTTGAGGAGATTGACCTGGATCATGATGATGCCGTAACAAGGATCATGAATGATTTTGACACTTCTGGCAATGCACTTGTTGATGAAGAAGAATTTGTTAATGGTGTGTGTAGATGGCTTCAAAGGGCCCAGCGTGCTCGAGTTGCATCTGGTGATGCTGGTCCACACACAATGAAGTTTTTAAGTGATTTTCACACAGAAACAAAAAGGGAACATGATTTGCTGGATGTGGGAGATCAGAGTAATGAAGAGGTTGAGGGCATTGAGAATTCTAAATGGATATCCATCAAAGCAGTTCTGTTTCTGCTACTGGGTTCTATTATTGCAGCTGCATTTGCTGATCCCCTGGTTGATGCAGTGGATAACTTTTCTGAGGCTACAAGTATTCCTGCTTTCTTCATTTCCTTCATTTTTCTGCCTTTAGCAACCAATTCAAGTGAAGCAGTGTCGGCAATAATTTTTGCTAGTCGTGATAAGAGGCAAACTGCCTCATTAACTTTTTCCGAGATATATGGTGCAGTGACAATGAATAATGTGCTTTGTCTATCAGTCTTCTTGGCCTTGGTTTATGCGAGGGGATTGACATGGGACTTCTCTTCAGAAGTGTTGGTTATTTTGGTCGTTTGCATTTTGTTGGGTGTCTTTGCCAGCTTCCGCACCGTCTTCCCTCTATGGACATCTATACTGGCTATCCTACTTTACCCCTTCTCCCTGGCATTGGTGTATGTTCTTGATTATGTATTTGGTTGGTCGTAG 1731 0.4518 MPASLTSYRSIFLILWIVILCGHAHARFFSRDPLSDGVSNNSWEGLLRLPSAITVESSCEQTYGFLPCTTTVLGNLFLILIYGFLMFKAATFLSGGSELLLEILGPGIVGGLFLPILGALPDAMLILVSGLSGSKETAQSQVSVGMGLLAGSTVLLLTIIWGTCVIVGKCDIEDSIAIDSQDTRGFSLTGSGVSTDIWTSYSARIMVISVLPFVIVQLPQILNSTSGRHLAVLIALIVSLGLLVAYCLYQIFQPWIQRRKLEYIKHKHVILGFLTHLKKRALGRLLNDNGEPDKEVIRKLFTTIDENQDGSLTHNELRALVIGIQFEEIDLDHDDAVTRIMNDFDTSGNALVDEEEFVNGVCRWLQRAQRARVASGDAGPHTMKFLSDFHTETKREHDLLDVGDQSNEEVEGIENSKWISIKAVLFLLLGSIIAAAFADPLVDAVDNFSEATSIPAFFISFIFLPLATNSSEAVSAIIFASRDKRQTASLTFSEIYGAVTMNNVLCLSVFLALVYARGLTWDFSSEVLVILVVCILLGVFASFRTVFPLWTSILAILLYPFSLALVYVLDYVFGWS* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0705 576 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 15 573 IPR004713 GO:0006812|GO:0008324|GO:0016021
Pvu5g0705 576 ProSitePatterns EF-hand calcium-binding domain. 305 317 IPR018247 -
Pvu5g0705 576 Pfam EF-hand domain pair 295 359 IPR002048 GO:0005509
Pvu5g0705 576 ProSiteProfiles EF-hand calcium-binding domain profile. 292 327 IPR002048 GO:0005509
Pvu5g0705 576 Gene3D - 275 391 - -
Pvu5g0705 576 Gene3D - 412 570 IPR044880 -
Pvu5g0705 576 Gene3D - 104 274 IPR044880 -
Pvu5g0705 576 SMART efh_1 336 364 IPR002048 GO:0005509
Pvu5g0705 576 SMART efh_1 296 324 IPR002048 GO:0005509
Pvu5g0705 576 Pfam Sodium/calcium exchanger protein 76 253 IPR004837 GO:0016021|GO:0055085
Pvu5g0705 576 Pfam Sodium/calcium exchanger protein 423 567 IPR004837 GO:0016021|GO:0055085
Pvu5g0705 576 PANTHER SODIUM/CALCIUM EXCHANGER NCL 15 573 - -
Pvu5g0705 576 SUPERFAMILY EF-hand 291 365 IPR011992 -
Pvu5g0705 576 CDD EFh 297 361 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0705 Pvu-Chr5 10807352 10812880 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0705 24 576 EF-hand Containing Proteins AT1G53210 67.254 0.0 746
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0705 - - gmx:100809896 999.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0705 5 10807352 10812880 Pvu5g0705 5 10807352 10812880 ECH