Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0676 ATGGCTACTTCCATTAACAGCACTGTTCTTGGGTGGAAATATTCCTCCTTTTTCTCACAATCTAATGCCTTCAACGCGGTTTCGCCTCCTTTCAAACCAAAACCCCCACTCTCCAAGTTTTCTCTCACTTGCTCTGCCGCCTCCTCTTCCTCTGATCCACTACTGGTTAAGGCTGCCAGGGGAGATCCTGTTAGTCGTCCTCCAGCATGGATGATGCGACAGGCAGGAAGGTACATGGCTGTTTACAGAAAGCTTGCTGAGAAATATCCATCCTTCAGAGAGAGGTCAGAGACAACTGACCTCATTGTGGAAATTTCTTTGCAGCCTTGGAAAGCTTTCAGGCCTGATGGAGTCATTATCTTCTCGGACATCCTTACACCACTTCCTGCATTTGGAGTTGATTTTGACATAGAAGACATAAGGGGACCTGTTATACATTCACCCATTCGTTCTGAGGAGGACTTGAAAACTTTACATCCAATTGACTTTGACAAGCTTAAATTTGTTGGAGAATCACTTAAGATACTGCGCCAAGAGGTTGGTGGTCATGCAGCTGTTTTGGGTTTTGTGGGAGCTCCTTGGACAATAGCAACATATATTGTGGAAGGGGGTACAACACGCACATATACAACCATTAAGAGCATGTGCCACACTGCTCCACATGTATTGAAGACTTTGCTTTCTCATTTGACGCAGGCAATAGCTGATTATGTTATTTTCCAAGTAGAGTCTGGGGCTCACTGCATACAAATATTTGACTCATGGGGTGGACAACTACCACCTGCTATGTGGGAACGCTGGTCAAAGCCTTATATCAAAGAGATTGTACATTTGGTCAAGAAAAAATGCCCTGAGGTACCGATTGTTCTTTATATAAATGGAAATGGTGGCCTTCTGGAGCGTATGAAAGACACTGGAGTTGATGTTATAGGGCTAGACTGGACAGTGGATATGGCAGATGGAAGAAGAAGATTGGGTAGTGGGATAGGTGTGCAGGGAAATGTGGATCCTGCCTACTTATTCTCCCCTCTTGCTGCCCTGACTGAAGAAATTCAGAGGGTTGTGAGGTGTGCGGGGCCCAGACGGCACATCCTTAATCTTGGGCATGGTGTCCTTGTTGGCACACCTGAAGAAGCTGTTGCACATTTCTTTGAAGTAGCTAGGAGCTTGCAGTTTGACACACTTTTTCCAAGCAATACTGCAAAAAACCCTAATCTAGTAACATAA 1227 0.4507 MATSINSTVLGWKYSSFFSQSNAFNAVSPPFKPKPPLSKFSLTCSAASSSSDPLLVKAARGDPVSRPPAWMMRQAGRYMAVYRKLAEKYPSFRERSETTDLIVEISLQPWKAFRPDGVIIFSDILTPLPAFGVDFDIEDIRGPVIHSPIRSEEDLKTLHPIDFDKLKFVGESLKILRQEVGGHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLKTLLSHLTQAIADYVIFQVESGAHCIQIFDSWGGQLPPAMWERWSKPYIKEIVHLVKKKCPEVPIVLYINGNGGLLERMKDTGVDVIGLDWTVDMADGRRRLGSGIGVQGNVDPAYLFSPLAALTEEIQRVVRCAGPRRHILNLGHGVLVGTPEEAVAHFFEVARSLQFDTLFPSNTAKNPNLVT* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0676 408 PANTHER METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED 38 402 - -
Pvu5g0676 408 Hamap Uroporphyrinogen decarboxylase [hemE]. 51 391 IPR006361 GO:0004853|GO:0006779
Pvu5g0676 408 SUPERFAMILY UROD/MetE-like 54 390 IPR038071 -
Pvu5g0676 408 TIGRFAM hemE: uroporphyrinogen decarboxylase 55 388 IPR006361 GO:0004853|GO:0006779
Pvu5g0676 408 ProSitePatterns Uroporphyrinogen decarboxylase signature 2. 187 203 IPR000257 GO:0004853|GO:0006779
Pvu5g0676 408 Pfam Uroporphyrinogen decarboxylase (URO-D) 54 389 IPR000257 GO:0004853|GO:0006779
Pvu5g0676 408 Gene3D - 43 392 IPR038071 -
Pvu5g0676 408 PANTHER UROPORPHYRINOGEN DECARBOXYLASE 1, CHLOROPLASTIC 38 402 - -
Pvu5g0676 408 CDD URO-D 57 389 IPR006361 GO:0004853|GO:0006779
Pvu5g0676 408 ProSitePatterns Uroporphyrinogen decarboxylase signature 1. 68 77 IPR000257 GO:0004853|GO:0006779
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0676 Pvu-Chr5 9925603 9929145 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0676 K01599 - gmx:100807032 742.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0676 5 9925603 9929145 Pvu5g0676 5 9925603 9929145 ECH