Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1345 ATGGCTTCCATCCCCACACTTTCTCCATCCCTACACACACTCTCTCCTCACTCCTCACTCCATTCTAACTCCAACCACTGCACTCTCCCTCCCACCTCTCTCTTCGGCGCCAGGATCACTCTCCTACGCACCACCTCATCATCCCGTTCCCTCCCCAATACCAATTGCCGTGCCTCTTCAGCAACGGTTTCGTTTAGCCTCCCCACCCCGAAAACCCCCGATGCTGTGCCGGAGAAAACCCCAAAGTGGTCGGCGAGGGCTATAAAATCGTTTGCAATGGCGGAATTGGAGGCGAGGAAGATAAAGTTTCCCAACACGGGAACCGAGGCTCTTCTGATGGGGATTTTGGTTGAAGGAACAAGTAGAGCTGCTAAATTCTTAAGAGCTAATGGAATTACTCTTTTCAAAGTTCGTGAAGAAACTTTAAATCTACTTGGGAAGTCTGACTTGTATTACTTCAGCCCTGAACATCCTCCTTTGACCGAACCAGCCAAGTCAGCCCTTGATTGGGCTATTGAGGAGAAACTGAAATCAGGTGAAGGAGGAGAAATGAACGTGACACATATACTTCTAGGAATTTGGTCACAAAAAGAATCAGCAGGTCAATTGATTTTGGCTACTCTAGGTTTCAATGATGAAAAAGCCAAAGAACTTGCTAAAACAATTGATGGAGATGTTGATTTGAGTTTCAAAAGGCAAACTTAA 705 0.4638 MASIPTLSPSLHTLSPHSSLHSNSNHCTLPPTSLFGARITLLRTTSSSRSLPNTNCRASSATVSFSLPTPKTPDAVPEKTPKWSARAIKSFAMAELEARKIKFPNTGTEALLMGILVEGTSRAAKFLRANGITLFKVREETLNLLGKSDLYYFSPEHPPLTEPAKSALDWAIEEKLKSGEGGEMNVTHILLGIWSQKESAGQLILATLGFNDEKAKELAKTIDGDVDLSFKRQT* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1345 234 MobiDBLite consensus disorder prediction 1 25 - -
Pvu4g1345 234 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPT1, CHLOROPLASTIC 6 231 - -
Pvu4g1345 234 SUPERFAMILY Double Clp-N motif 82 224 IPR036628 -
Pvu4g1345 234 ProSiteProfiles Clp repeat (R) domain profile. 77 225 IPR004176 -
Pvu4g1345 234 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPT1, CHLOROPLASTIC 6 231 IPR044217 -
Pvu4g1345 234 Pfam Clp amino terminal domain, pathogenicity island component 104 146 IPR004176 -
Pvu4g1345 234 Pfam Clp amino terminal domain, pathogenicity island component 186 220 IPR004176 -
Pvu4g1345 234 Gene3D - 82 229 IPR036628 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1345 Pvu-Chr4 40259934 40264665 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1345 - - var:108344079 371.703
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g1345 4 40259934 40264665 Pvu4g1345 4 40259934 40264665 ECH