Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1339 ATGGGAAACGAGGAAGGAAACAAAAAAAGAGAAGAGAGAATCAGAGAGACAGTGGTTGGTTGGTTTTGGTTCTCTTCTTCTTCCTTCTCCTTTCTGCTTCTTCACTCTTCATTTTTTCCTTTTCTTTCTCCTCCCACCACACAAACCAAACCCCTCTCCACACTCCACCCTCACACCCCCTCCGGGTCAATGACCCAGACCCGAAAGCCCACCAAGCCCAACCCCCAACCCCACCAGGCCCATAACCCTTCATTCTCCACCACCGGCATGAAACTCATCGTCCCTCTCCAGGGCGTCGTCCAGGGCCGCGGAGGCCTTCTCCTCGGGACCCTCGTCCCATGCGCCCTCTTCTACTTCCTCCAGCTCTACCTCAAACGACGCCGTTCCAACTTCTCCCCTCCCTCCCCCTCCTCCGAGCCCACCCTCCACCGAACCTCCTCCCGCTCCAATTTGTCCACACGTGGCTCCATTTCCCGGGTTCGCCTCTCCAAGCTCGCCACGCAGATTTCCAGGCCCGAGGACTCCCTCTATTACCTCGGCTTGGAGAGGGTGTCGCGAGATCCCTACCACGCCCTGCACAATCCCAATGGGATTATTCAGTTGGGCTTGTCGGATAACAAGCTGTGCTTTGATCTGATAGGGGAATGGGTGGCGCGGAACTTGGAGGGGACGATGAGTGGCGGTGTTGGTTTGGGTATCAATGGGATTGCGCCGTATCAGACGTTTGATGGCTTGATGGAATTGAAAATGGCCTTGTCAGATTTTATGCATCAGGTTATGGGGGGATCAGTGAAATTTGACCCATCTAATATGGTTCTAACAGCTGGAGCAACTCCTGCAATTGAGATATTGTCCTTCTGTTTGGCAGACCATGGGAATGCATTCCTTGTCCCTACACCATATTATCCAGGATTTGACAGGGATGTAAAATGGCGTCCAGGGGTAGACCTAATACCTGTTCACTGTCGCAGTACTGACAATTTCAATCTAAATATCACTGCTCTTGAACAAGCATATAGTCAAGCAAGAAAACGAGGAGTCAAAGTTCGTGGAATTCTAATTTCTAACCCTTCAAATCCCGTTGGCAATATTATGACACAAGACATGCTATACAGTCTTCTGGACTTTGCTGAAGAAAAAAACATACATATCATTGTTGATGAAGTATTTGCAGGCTCCACGTACGGAAGTGAAAAGTTTGTGAGTCTAGCTGAAGTTCTTGATTCAGATATAGACAAGAGTCGGTTTCACATAATATATGGCCTGTCAAAAGACCTCTCTCTTGCCGGCTTTAGAGTTGGGGTTATATGTTCATTCAACGACAATGTCTTGGTTGCTGCCAAGAAGTTGACTAGATTTTCCTCTATATCTGCTCCGACCCAGAGGTTAGTTACTTCAATGCTTTCAGACAAAAGATTTATTCGGGAGTACTTAGAAACCAACCGGAAAAGAATACGACAAGTGCATGATGAATTTGTGGATTGTTTAAGTAAACTAGGAATCAAGTGTGCCAAGAGCAGTGCTGGTATGTTCTGTTGGGCTGATATGAGTGGATTAATCCGACCTTACAGTGAAAAAGGGGAAATTGAGTTGTGGGAGAAGTTTCTAAGTATTGCTAAGATCAATATAACTCCTGGATCAGCCTGCCATTGCATAGAACCAGGATGGTTTCGAATTTGTTTTACTACTATAACATTAGAGGAGATCCCTCTAGTTATTGAACGAATTAGGAGAGTTGTTGAGAGTTGTAATTCTTCTAGTTGA 1764 0.4677 MGNEEGNKKREERIRETVVGWFWFSSSSFSFLLLHSSFFPFLSPPTTQTKPLSTLHPHTPSGSMTQTRKPTKPNPQPHQAHNPSFSTTGMKLIVPLQGVVQGRGGLLLGTLVPCALFYFLQLYLKRRRSNFSPPSPSSEPTLHRTSSRSNLSTRGSISRVRLSKLATQISRPEDSLYYLGLERVSRDPYHALHNPNGIIQLGLSDNKLCFDLIGEWVARNLEGTMSGGVGLGINGIAPYQTFDGLMELKMALSDFMHQVMGGSVKFDPSNMVLTAGATPAIEILSFCLADHGNAFLVPTPYYPGFDRDVKWRPGVDLIPVHCRSTDNFNLNITALEQAYSQARKRGVKVRGILISNPSNPVGNIMTQDMLYSLLDFAEEKNIHIIVDEVFAGSTYGSEKFVSLAEVLDSDIDKSRFHIIYGLSKDLSLAGFRVGVICSFNDNVLVAAKKLTRFSSISAPTQRLVTSMLSDKRFIREYLETNRKRIRQVHDEFVDCLSKLGIKCAKSSAGMFCWADMSGLIRPYSEKGEIELWEKFLSIAKINITPGSACHCIEPGWFRICFTTITLEEIPLVIERIRRVVESCNSSS* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1339 587 Pfam Aminotransferase class I and II 200 576 IPR004839 GO:0009058|GO:0030170
Pvu4g1339 587 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 81 584 - -
Pvu4g1339 587 PANTHER AMINOTRANSFERASE ACS12-RELATED 81 584 - -
Pvu4g1339 587 SUPERFAMILY PLP-dependent transferases 167 581 IPR015424 -
Pvu4g1339 587 MobiDBLite consensus disorder prediction 49 86 - -
Pvu4g1339 587 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 201 227 - -
Pvu4g1339 587 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 233 249 - -
Pvu4g1339 587 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 270 290 - -
Pvu4g1339 587 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 292 313 - -
Pvu4g1339 587 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 346 370 - -
Pvu4g1339 587 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 382 405 - -
Pvu4g1339 587 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 415 439 - -
Pvu4g1339 587 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 447 470 - -
Pvu4g1339 587 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 421 434 IPR004838 GO:0003824|GO:0009058|GO:0030170
Pvu4g1339 587 Gene3D - 221 470 IPR015421 GO:0003824
Pvu4g1339 587 MobiDBLite consensus disorder prediction 130 155 - -
Pvu4g1339 587 Gene3D Aspartate Aminotransferase, domain 1 187 575 IPR015422 GO:0003824
Pvu4g1339 587 CDD AAT_like 239 578 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1339 Pvu-Chr4 40180852 40184964 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1339 K14270 - gmx:100800539 929.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g1339 4 40180852 40184964 Pvu4g1339 4 40180852 40184964 ECH