Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1302 ATGGCCTCTTCACACCCTACCAATGTGGGAATCCTTGCCATGGACATCTACTTCCCTCCCAGCTGCGTCACCCAGGAAGCTTTGGAGGGTCATGATGGGGTGAGCAAAGGGAAATACACTATTGGGCTTGGACAGGATTGCATGGCCTTCTGCTCTGAGGTTGAAGATGTTATCTCAATGAGCTTGACAGTAGTTGCTTCACTTCTTGAAAAATTTAATGTTGATCCAAAGCAGATTGGACGCTTGGAGGTTGGGAGTGAAACTGTCATTGATAAAAGCAAATCCATTAAGACCTTTCTGATGCAAGTTTTTGAGGCGAGTGGTAATACTGACATCGAAGGTGTTGATTCAACCAATGCGTGCTATGGAGGAACAGCGGCTTTGTTCAACTGTGTGAATTGGGTGGAGAGTAGTTCATGGGATGGACGTTATGGACTTGTTGTATGTACAGACAGTGCGGTATATGCAGAAGGACCTGCCCGTCCCACTGGAGGAGCAGCTGCAATTGCCATGCTTGTAGGGCCAGATGCTCCTATTGCTTTTGAAAGCAAACTCAGAGGCAGTCACATGTCTCATGCATATGATTTTTACAAGCCAAATCTTGCTAGTGAATATCCAGTTGTTGATGGAAAACTCTCACAGACCTGTTATCTCATGGCCCTTGATTCCTGTTATCGGATTTTTTGTGAGAAATTTGAAAAATTGGAGGGGAGGCCTTTTTCAATATCAGATTCTGATTATTTTGTGTTTCATTCTCCATATAACAAGCTTGTGCAGAAAAGTTTTGGCCGGCTATACTTTAATGACTTCATGAGAAATCTCAGTTTCGTTGATGAAGCTGCCAGGGAAACCCTTGCACCATATGCTTCCTTATCTAGTGATGAGAGTTATCAAAGTCGTGATCTTGAAAAGGCAAACCAGCAAGCTGCCAAACATGTATATGATGCAAAAGTGCAGCCCAGCACACTAATCCCAAAGCAAGTTGGTAACATGTACACTGCATCTCTTTATGCAGCATTTGCATCTCTTCTTCATAATAAAAACACTTCATTGGTGGGTAAACGGGTGGTTATGTTTTCATATGGAAGTGGTTTAACAGCTACAATGTTCTCTGTCCACCTTCAAGAAGGTCAGCATCCGTTTAACTTGTCAAACATTGTAACCGTGATGAATGTTTCGGACAAGTTGAAGCAGAGACTTGAGATTCCTCCTGAAAAGTTTGTTGAAACATTGAAGATCATGGAGCACCGTTATGGGGGTAAGGACTTTGTGACAAGCAAGGACTGCAGCTACTTGCCTCCAGGCACCTTCTATCTCACCAATGTTGATTCTATGTACAGGAGATATTATGCCAAGAAGGACAAGGTGATTGGTTAG 1377 0.4314 MASSHPTNVGILAMDIYFPPSCVTQEALEGHDGVSKGKYTIGLGQDCMAFCSEVEDVISMSLTVVASLLEKFNVDPKQIGRLEVGSETVIDKSKSIKTFLMQVFEASGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLVGPDAPIAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYRIFCEKFEKLEGRPFSISDSDYFVFHSPYNKLVQKSFGRLYFNDFMRNLSFVDEAARETLAPYASLSSDESYQSRDLEKANQQAAKHVYDAKVQPSTLIPKQVGNMYTASLYAAFASLLHNKNTSLVGKRVVMFSYGSGLTATMFSVHLQEGQHPFNLSNIVTVMNVSDKLKQRLEIPPEKFVETLKIMEHRYGGKDFVTSKDCSYLPPGTFYLTNVDSMYRRYYAKKDKVIG* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1302 458 Gene3D - 2 454 IPR016039 GO:0016746
Pvu4g1302 458 TIGRFAM HMG-CoA-S_euk: hydroxymethylglutaryl-CoA synthase 6 453 IPR010122 GO:0004421|GO:0008299
Pvu4g1302 458 CDD init_cond_enzymes 8 372 - -
Pvu4g1302 458 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 179 453 IPR013746 GO:0004421|GO:0006084|GO:0010142
Pvu4g1302 458 SUPERFAMILY Thiolase-like 179 451 IPR016039 GO:0016746
Pvu4g1302 458 SUPERFAMILY Thiolase-like 8 176 IPR016039 GO:0016746
Pvu4g1302 458 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 109 124 IPR000590 GO:0004421|GO:0008299
Pvu4g1302 458 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 5 453 - -
Pvu4g1302 458 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 6 178 IPR013528 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1302 Pvu-Chr4 39489170 39495716 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1302 K01641 - gmx:100794889 880.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g1302 4 39489170 39495716 Pvu4g1302 4 39489170 39495716 ECH