Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1270 ATGGGGAATTCATTTGGTTGCTCGGCGTCAGGCGAGAGGTTGGTGTCGGCGGCGAGGGATGGAGATTTGGTTGAGGCGAAGATGCTTCTAGAATGCAACCCTGGTCTTGCAAAGTACTCCACTTTTGGGGGTCTCAATTCCCCTCTTCATTTTGCAGCTTCTAAAGGCCATAATGAGATTGTGGCATTGCTGCTTGAAAATGGAGCTGATGTGAATTCAAGAAATTATTGTGGGCAGACGGCATTGATGCAAGCTTGTAGATATGGTCATTGGGAAGTTGTACAAACTCTTCTGCTCTTCAGATGTAATGTTATGAAAGCAGATTATCTCAGTGGGAGGACAGCTCTACACTTTGCAGCCATCAATGGACATGCAAGATGCATCAGACTTGTTGTTGCAGATTTTGTTCCAAGTGCTCCTTTTGAAGCTTTACATGCTCGCATGGATGTGGAAGGAGATGGATCAAATGTGAAAAACAAACATGAACAAAGTGTGCTGTCGAAGTTTGTAAATAAAACAGCTGATGCTGGTATTACTGCCCTTCATATGGCTGCATTAAATGGGTACTTTGATTGTGTCCAACTGCTACTTGATCTTGATGCAAATGTGTCAGCTGCAACATTTCATTATGGAACATCAATGGATTTAATTGGGGCTGGAAGCACTCCGTTGCATTATGCTGCTTGTGGAGGCAATTTAAAATGCTGCCAGATCCTCCTTGCAAGAGGTGCCAGTCGGATGGCTTTGAATTGCAATGGATGGCTTCCACTTGATGTTGCTAGGATGTGGGGACGTCATTGGCTTGAACCATTGCTCGCACCCACTTCTGAAGCCACAATATCGACGTTTCCTTCTTCAAATTATTTGTCCTTGCCTCTCATGAGTGTGCTCAACATTGCCAGGGACTGTGGATTGCAATCAACTACAACCTCCTCTAGTGAAGTTGATGTTTGTGCTGTCTGCCTGGAGAGGTCATGTTCAGTGGCTGCTGAAGGATGTGGACATGAGCTTTGTGTAAGATGTGCACTCTATCTTTGCTCAACAAGCAATGTTTCTTCTGAAACGTGTGGACCTCCTGGCTCTATCCCTTGCCCCTTATGCAGACATGGAATTGTCTCTTTTGTCAAGTTACCAGGTTCCCAAGCAAAAGAAAACAAAATGCATGTGTCTCTCAGCCTGTGTACCCCATGCATGCTACACCCACGTGACCTAGATCACTCGTCGGTTTCTCGTACCCCTGAGATTCGAAGGAACCGTGTAGCTTCAGTTCCATCAGAGATGCTTTGCCCTGTCACTTGTACTCCATTTCCTTCTGTAGCTATTCCTCTGTGTACTTGCAATGATGGTCCTTGTCCAACATTTGAATCCCGGGAAGGGGAAACACGAGATGAATCAGATCGCCGCTCATCCGCGACGATGGATCAGGATAAAATGGAAGGTCCAAGGCTGGATAAAACAACATGTTCAGGCATGTTTTGGGGTAGAAGAAGTTACAGCAGGGAGCATCAATGCAATTCAGAAATAAATGCTTGA 1533 0.454 MGNSFGCSASGERLVSAARDGDLVEAKMLLECNPGLAKYSTFGGLNSPLHFAASKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVMKADYLSGRTALHFAAINGHARCIRLVVADFVPSAPFEALHARMDVEGDGSNVKNKHEQSVLSKFVNKTADAGITALHMAALNGYFDCVQLLLDLDANVSAATFHYGTSMDLIGAGSTPLHYAACGGNLKCCQILLARGASRMALNCNGWLPLDVARMWGRHWLEPLLAPTSEATISTFPSSNYLSLPLMSVLNIARDCGLQSTTTSSSEVDVCAVCLERSCSVAAEGCGHELCVRCALYLCSTSNVSSETCGPPGSIPCPLCRHGIVSFVKLPGSQAKENKMHVSLSLCTPCMLHPRDLDHSSVSRTPEIRRNRVASVPSEMLCPVTCTPFPSVAIPLCTCNDGPCPTFESREGETRDESDRRSSATMDQDKMEGPRLDKTTCSGMFWGRRSYSREHQCNSEINA* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1270 510 SUPERFAMILY RING/U-box 317 374 - -
Pvu4g1270 510 SMART ANK_2a 44 73 IPR002110 GO:0005515
Pvu4g1270 510 SMART ANK_2a 176 205 IPR002110 GO:0005515
Pvu4g1270 510 SMART ANK_2a 77 106 IPR002110 GO:0005515
Pvu4g1270 510 SMART ANK_2a 111 142 IPR002110 GO:0005515
Pvu4g1270 510 SMART ANK_2a 219 248 IPR002110 GO:0005515
Pvu4g1270 510 ProSiteProfiles Ankyrin repeat region circular profile. 219 245 - -
Pvu4g1270 510 ProSiteProfiles Ankyrin repeat profile. 219 251 IPR002110 GO:0005515
Pvu4g1270 510 ProSiteProfiles Ankyrin repeat profile. 176 208 IPR002110 GO:0005515
Pvu4g1270 510 SUPERFAMILY Ankyrin repeat 14 272 IPR036770 -
Pvu4g1270 510 Gene3D - 3 149 IPR036770 -
Pvu4g1270 510 ProSiteProfiles Ankyrin repeat profile. 44 76 IPR002110 GO:0005515
Pvu4g1270 510 Coils Coil 508 510 - -
Pvu4g1270 510 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XBOS32 1 510 - -
Pvu4g1270 510 MobiDBLite consensus disorder prediction 455 485 - -
Pvu4g1270 510 Pfam Ankyrin repeats (many copies) 169 197 IPR002110 GO:0005515
Pvu4g1270 510 Pfam Ankyrin repeats (many copies) 46 98 IPR002110 GO:0005515
Pvu4g1270 510 Pfam Ankyrin repeats (3 copies) 212 266 IPR002110 GO:0005515
Pvu4g1270 510 Pfam Ankyrin repeat 112 130 IPR002110 GO:0005515
Pvu4g1270 510 ProSiteProfiles Ankyrin repeat region circular profile. 176 205 - -
Pvu4g1270 510 PANTHER HOMEOBOX PROTEIN WARIAI 1 510 - -
Pvu4g1270 510 ProSiteProfiles Ankyrin repeat profile. 111 132 IPR002110 GO:0005515
Pvu4g1270 510 ProSitePatterns Zinc finger RING-type signature. 333 342 IPR017907 -
Pvu4g1270 510 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 389 IPR013083 -
Pvu4g1270 510 Gene3D - 150 279 IPR036770 -
Pvu4g1270 510 MobiDBLite consensus disorder prediction 455 483 - -
Pvu4g1270 510 ProSiteProfiles Zinc finger RING-type profile. 318 368 IPR001841 -
Pvu4g1270 510 ProSiteProfiles Ankyrin repeat region circular profile. 44 75 - -
Pvu4g1270 510 ProSiteProfiles Ankyrin repeat region circular profile. 111 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1270 Pvu-Chr4 38830916 38840044 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1270 17 272 Miscellaneous Gene Families AT5G02620 27.273 6.80e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1270 K19044 - gmx:100812809 983.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g1270 4 38830916 38840044 Pvu4g1270 4 38830916 38840044 ECH
Pvu4g1270 4 38830916 38840044 Pvu7g0691 7 6057151 6062229 PCT