Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1202 ATGTCTGATGCTGCTATGGCAGTTGTGAAACCTCAGATGAAATCCTACATCTGGCTTCAAACTGAGGATGGCTCTATTCATCAAGTAGAGGAAGAGGTAGCCATGTTCTGCCCCATGATTTGCCAGGAAGTACTTCAAACAGGCATGGGATCTTCCAAAACTCATGCTATATCTCTTCCACATCATGTCAATCCTGCAATCTTGGATTTGATACTTGATTACTGTCGGTTTCACCAAGTACCAGGACATTCTAACAAAGAGCTCAAAAATTTTAATGAGAAGTTTATTCGGATAGATACAAAGAAGTTATGTGAGTTAACATCTGCTGCTGACAGCCTCCAACTGAAGCCTTTGGTTGACCTGACCAGTCGAGCACTTGCTAGGATTATTGAAGGAAAAACCCCCGAGGAGATTCGTGAAACATTTCATTTGCCTGATGACCTCACTGAGGAAGAGAAGCTGGAGCCTCTGAGAAACATGACCGATGATCCACGTATTCGACTTCTAAACAGATTGTATGCTAGAAAGAGGAAAGAACTACAAGAGAGAAAGAAACTGAAGGATGTTGTGGTTGAGGAGGAACCAAAGGATGAACGTTCAGTTGAAGATCTTCTATCATTTATTAATGGCGCAAATGCAGATATAAAGGGAAGTAGAGCAAATAAAAATAAAAAGAATAGAAGGAAAGACCAGGCAAAGGATCTTTCTTCAAAAAATGCAAATATAAACAATAAGGGGTTGAATCTTCTTCCTTCTGCATATCACAATGTCAATTTTGACAAGGCCTTAGAGGCCTCGGCCAGTCAACACTCAAGGATGCAAACCCTTCCAGCTGTTAATTTTTCTCCAAAATTTGAATTGATTGATGGTGATGTTGACGATGATTTCGATCCTGCTATGAAGGAGGAGCTTGACAGGGAAGTGGAAGATTTTGCACGAAGATTAAATTCAGATTGGCCTGAAAGGATGCAAATTTTATCTTTGGGTCAAGACAGAAGACTGGTACCAATTTCTGTGAATGGCAATGGTGCAACGCACCTGTACACAAGTCTGTGTTGA 1059 0.4079 MSDAAMAVVKPQMKSYIWLQTEDGSIHQVEEEVAMFCPMICQEVLQTGMGSSKTHAISLPHHVNPAILDLILDYCRFHQVPGHSNKELKNFNEKFIRIDTKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLRNMTDDPRIRLLNRLYARKRKELQERKKLKDVVVEEEPKDERSVEDLLSFINGANADIKGSRANKNKKNRRKDQAKDLSSKNANINNKGLNLLPSAYHNVNFDKALEASASQHSRMQTLPAVNFSPKFELIDGDVDDDFDPAMKEELDREVEDFARRLNSDWPERMQILSLGQDRRLVPISVNGNGATHLYTSLC* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1202 352 Pfam Skp1 family, dimerisation domain 116 153 IPR016072 GO:0006511
Pvu4g1202 352 SMART skp1_3 14 115 IPR001232 GO:0006511
Pvu4g1202 352 Gene3D Potassium Channel Kv1.1; Chain A 10 161 IPR011333 -
Pvu4g1202 352 SUPERFAMILY Skp1 dimerisation domain-like 88 158 IPR036296 GO:0006511
Pvu4g1202 352 SUPERFAMILY POZ domain 15 79 IPR011333 -
Pvu4g1202 352 Pfam Skp1 family, tetramerisation domain 17 79 IPR016073 GO:0006511
Pvu4g1202 352 PANTHER OS03G0107000 PROTEIN 1 248 - -
Pvu4g1202 352 MobiDBLite consensus disorder prediction 215 245 - -
Pvu4g1202 352 Coils Coil 169 189 - -
Pvu4g1202 352 PANTHER SKP1 1 248 IPR016897 GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1202 Pvu-Chr4 37241149 37246564 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1202 - - pvu:PHAVU_010G020600g 597.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g1202 4 37241149 37246564 Pvu4g1202 4 37241149 37246564 ECH