Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1101 CTTCGGTTTCCTACTCAACTTGAAGAACTAAGTTTAATGTCAAACTCTTTGAAAGGTGTGATAAAGGACTCTCATTTTACTAATATGTCAAAGTTAGAAACATTGGAGTTATCAGATAACTCATTAGTCTTGAAATTCAGTCCAAATTGGGCTCCATCATTTCAATTGGGTTATATTGGATTGAGATCTTGCAAAGTTGGTCCATTATTTCCAAAATGGATACAGTCACAAAACAAAATTCGTTTCCTTGACATTTCAAATAATGGAATATCTGACACTCTTCCAATATGGTTTTGGGATAAATTTGAATTGCGATACCATATCAGTATCAACATTTCATGCAACAATCTACGAGGTATGATTCCTGATTTGTCACCAGAGAACCATTTTTTGCACCTTAATTTTGGTTCAAATCAATTTGAAGATTCTTTTTTGTTTTTATGTTCTGGTGGTGTAGTTGGAACTTTATATCAATTGGACCTTTCAAATAATAAGTTGTCTGGAGAAATTCTAGATTGTTGTACCCAATTCAAATCATTGGTTTATTTAAACATGAGTCAGAATAATTTTTCTGGAAAAATTCCTACTTCACAAGGATCACTCCTTGAACTTCAAGTATTGTTATTGAGAAACAATAACTTAACAGGTGAATTATCTTCTTCCTTGAGAAATTGCATAAAGTTAGTGATGCTAGATATGACAGAAAATAGATTATCAGAATCTATTCCAGATTGGATTGGGAGCAAATTGCTAGAGTTACAATTTTTAAGCTTGGGAAATAATTCCTTCAATGGAAGTTTACCTTTACAAATTTGTTATCTAAAAAGCATTCAACTCTTGGATCTCTCACTAAACAACATATCTGGACAAATTCCTAAATGCATAAAAAACTTCTCCTCAATGACTCAAGTGCCTTCTTTAAGAGATTATCAAGTTCATTTGTATATGGCCTACATAAACTCTTTCTCGATTTATCTTACATACAATTTGAATGCATTCTTGATGTGGAAAGGATCAGAGCAAATGTTCAAAAATAATGGATTATCACTTTTGAAAAGCATTGATCTCTCGAGCAATCAATTATCGAGAGAAATTCCAAAAGAAATAGCTAATCTTTTTGGATTGATTTCATTGAATTTATCAAGAATTTATTTGACAGAGAAAATTCCTTCAAATATTGGAAAGTTAACCTCACTTGAATTTCTTGATTTGTCAAGAAACCAACTTGTTGGTTCGATTCCTTTGAGTCTTGCTCAAATTGATCGACTCACGATATTAGATTTGTCACATAATTATTTATCCGGAAAAATTCCTACTGGCACACAATTACAGAGTTTCGATTCATCAAAATATGAAGGCAATGTTGATCTGTGTGGACCGCCATTAAAGAAATTGTGTATTGATAGAGTGTCGAGACAACAACCAATTGCTAATTTTCACGAGAATGACAATTTGATTTTCAATCGTGAATTTTACACAAGTATGGCAATTGGATTTGTTATGAGCTTTTGGGGAGTGTTTGGCTCAATCTTAATAATACGTTCTTGGCGCCATGCATATTTCAAGTTCTTAAGTAATTTAGAAGACATTCTTTATATCATGGTAGCAATGAAAGTTTTCAAATGGTGA 1629 0.3217 LRFPTQLEELSLMSNSLKGVIKDSHFTNMSKLETLELSDNSLVLKFSPNWAPSFQLGYIGLRSCKVGPLFPKWIQSQNKIRFLDISNNGISDTLPIWFWDKFELRYHISINISCNNLRGMIPDLSPENHFLHLNFGSNQFEDSFLFLCSGGVVGTLYQLDLSNNKLSGEILDCCTQFKSLVYLNMSQNNFSGKIPTSQGSLLELQVLLLRNNNLTGELSSSLRNCIKLVMLDMTENRLSESIPDWIGSKLLELQFLSLGNNSFNGSLPLQICYLKSIQLLDLSLNNISGQIPKCIKNFSSMTQVPSLRDYQVHLYMAYINSFSIYLTYNLNAFLMWKGSEQMFKNNGLSLLKSIDLSSNQLSREIPKEIANLFGLISLNLSRIYLTEKIPSNIGKLTSLEFLDLSRNQLVGSIPLSLAQIDRLTILDLSHNYLSGKIPTGTQLQSFDSSKYEGNVDLCGPPLKKLCIDRVSRQQPIANFHENDNLIFNREFYTSMAIGFVMSFWGVFGSILIIRSWRHAYFKFLSNLEDILYIMVAMKVFKW* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1101 542 PRINTS Leucine-rich repeat signature 156 169 - -
Pvu4g1101 542 PRINTS Leucine-rich repeat signature 396 409 - -
Pvu4g1101 542 PANTHER BNAC08G45300D PROTEIN 4 533 - -
Pvu4g1101 542 Pfam Leucine rich repeat 6 51 IPR001611 GO:0005515
Pvu4g1101 542 SUPERFAMILY L domain-like 153 463 - -
Pvu4g1101 542 SUPERFAMILY L domain-like 5 219 - -
Pvu4g1101 542 Gene3D Ribonuclease Inhibitor 2 105 IPR032675 -
Pvu4g1101 542 Gene3D Ribonuclease Inhibitor 106 469 IPR032675 -
Pvu4g1101 542 PANTHER OS10G0469600 PROTEIN 4 533 - -
Pvu4g1101 542 ProSiteProfiles Leucine-rich repeat profile. 422 444 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1101 Pvu-Chr4 32683594 32685287 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1101 7 521 Miscellaneous Gene Families AT1G74190 28.139 1.32e-55 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1101 - - vun:114180195 778.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g1101 4 32683594 32685287 Pvu4g1101 4 32683594 32685287 ECH