Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1098 ATGAGATGCCTTCCAAAGGAGAGGGAAGCACTCCTCCAATTCAAGGCTGCCATTCTTGATCCCTACGGCATGCTCTCCTCTTGGTCCACTCCCAATTGTTGCCAGTGGGAGGGGATTCGCTGCAGCAACCTCACCGCCCATATTCTAGGCCTCCACCTTCCTGGACACTATTATTTCGAATATCAAGAACTCTCTGAACGTTATATCAGCGGAGAGATCCACGAGTCATTGATGGAGTTGCGACAATTAGAGTATTTGAACCTCAGTTCTAATTCTTTTGAAGGCAGTCACATCCCTGAGTTTCTTGCTTCTCTCACAAAGTTGAAATACCTTGATCTCTCTTCATGTTATTTTATCGGAGAAATTCCAATTCAGTTTGGCTCTCTTTCTCATTTGAAATACTTAAATGTCGCTTATAATATCTGGAGGTTGCAGTATCTTGATATTCGAAGTAATTCTTTGGAAGGAGATGTACCATCTCAGCTTGGTAATATCTCTCAGTTGCAGCATCTTGATCTCAGATATAATTCTTTGCAAGGAAACATTCCTTCCCAACTAGGAAATCTCTCCCAGTTGCAGGAGCTCTATCTTGGACGATGTAAAGATTTTAGAGGATGCTATGCTACTCTAAAAATTAATGAAGGAGGTCAGTGGCTCTCAAATCTCATTTCTTTAACTCATCTTTCCTTAGAACACATAACTAATTTTAACACTTCACCTAGCTACTTTCGAATGATTGCCAAGCTCCCAAAACTAAGAGAACTGAGTTTAATTGAGTGTGGCCTTTCCAATCATTTTCTCCATTCATTCCAGCCTTCCAACTTCAATTTTTCTACTTCCCTTTCTCTTGACCTTAGTGGTAACCTCTTGAAGGGTTCCACATCAAATCGTTTTGGCTTGGCCATGAATTCGCTTCAGCACCTTCAACTCTCCTTTAATATGTTCAAGGGTAAGGATTTGAACTCATTCATGAATATATGCACCCTACGTTCTTTATACATGTATGACAACAATATGACCGAAGACCTTCCGTCAATTCTTCGTAATTTTTCTAATGGTTGTGTTAGATACTCACTTCAAGAGCTGCAGTTGTCATACAATCAAATCACGGGATCCGTACCTGACCTTTCAATATTCTCATCTTTAAAATCATTGTATCTTTCCAACAATCAATTGAGTGGGAAGATACCTCAAGATACCAGATGGCCATCTCAGTTGGAACATTTGTCAATTGGATCTAACTCTTTAGAAGACAGTGTTCCAATGTCATTTGAGAGCACATGTCATTTGGAGTCATTGGATTTGTCTTATAATAAGTTGAGTGAAGATTTGGCTGTCGTATTTAATCATTTGTCCAGATGTTGTAGATATTCATTGCGAGAACTATATCTTCGTGAAAATAAATTCAACGGTGCACTTCCTGATTTCTCAATGTTTTCCAAGTTGGAAATACTAGATGATTTATACCTTGATAGAAATAAGCTAAATGGAACAATTTCTGAAGATCTTCGGTTTCCTACTCAACTTGAAGAACTATCTTTAATGTCAAACTCTTTGAAAGGTGTGATAAAGGACTCTCATTTTTCTAATATGTCAAAGTTAGAATCATTGGACTTATCAGATAACTCATTAGTCTTGAAATTCAGTCGAAATTGGGCTCCATCATTTCAATTGGGTTATATTGGATTGAGATCTTGCAAAGTTGGTCCATTATTTCCAAAATGGATACAGTCACAAAACAAAGTAAGTTTCCTTGACATTTCAAATAATGGAATATCAGACACTCTTCCAAAATGGTTTTGGGACAAATTTGAATTGCGATACTCGATCAACATCAACATTTCATACAACAATCTACAAGGCATGATTCCAAATTTGTCATTAGAGATTTATTTTGAATCCTTTAATCTTGGGTCAAATCAATTTGAAGGTCCTATTCCATCATTTTTACGAGATTCAATGTATCTTGATCTGTCTAACAATAAATTCACAGATTCTTTTTTGTTTTTATGTTCTGGTGGTGTAGTTGGAACTTTATATCAATTAGACCTTTCAAATAATAAGTTGTTAGGAGAAATTCCAAATTGTTGGACCCATTTCAAATCATTGGCTTATTTAAACATGAGTCAAAACAAATTTTCAGGAAAAATTCCTACTTCCATGGGATCACTCCTTGAACTTCAAGTATTGTTATTGAGAAACAATAACTTAGCAGGTGAATTCTCTTCTTCCTTGAGAAATTGCACAAAGTTAGTGATGTTGGATATGACAGAAAATAGATTATCAGGATCTATTCCAGATTGGATTGGGAGCAAATTTCTAGAGTTACAATTTTTAAGCTTGGGAAATAATTACTTCAATGGAAGTTTACCTTTGCAAATTTGTTATCTAAAAAGCATTCACCTCTTGGATCTCTCACTAAACAACCTATCCGGACAAATTCCTAAATGCATAAAAAATTTCTCCTCAATGACTCAAGTGACTTCTTTGAGAGATTATCAAGGTTACTTGTATTTGGCCAACACAAGCCATATCAGAGGTAACATTTCATACAATTTGAATGCATTTTTGATGTGGAAAGGATCAGAGCAAATGTTCAAAAATAATGGATTATCACTTTTAAAAAGCATTGATCTCTCAAGCAATCAATTATCGGGAGAAATTCCAAAAGAAATAGAGAATCTTTTTGGATTGATTTCATTGAATTTATCAAGAAATCATTTGACGGAGAAAATTCCTTCAAATATTGGAAAGTTAACCTCACTTGAATTTCTTGATTTGTCAAGAAACCAACTTGCTGGTTCAATTCCTTTGAGTCTTGCTCAAATTGATCGACTCACAATATTAGATTTGTCACATAATTATTTAATCGGAAAAATTCCAACTGGTACACAATTACAGAGTTTCGATACATCAAAATATGAAGGCAATGTTGATTTGTGTGGACCGCCATTAAAGAAATTGTGTATTGATAAAGTGTTGAGACAAGAACCAATTGCTAATTTTCACGATAAAGACAATTTGATTTTCAATCGGGAATTTTACACAAGTATGACAATTGGATTTGCTATGAGCTTTTCGAGAGTGTTTGGCTCAATCTTAATAATACGATCTTGGCGTCATGCATATTTCAAGATCTTAAGTAATTTAGAATACATTCTTTATATCATGGTAGCAATGAAAGTTTTCAAGTGGTGGCAGACAAGATAA 3210 0.353 MRCLPKEREALLQFKAAILDPYGMLSSWSTPNCCQWEGIRCSNLTAHILGLHLPGHYYFEYQELSERYISGEIHESLMELRQLEYLNLSSNSFEGSHIPEFLASLTKLKYLDLSSCYFIGEIPIQFGSLSHLKYLNVAYNIWRLQYLDIRSNSLEGDVPSQLGNISQLQHLDLRYNSLQGNIPSQLGNLSQLQELYLGRCKDFRGCYATLKINEGGQWLSNLISLTHLSLEHITNFNTSPSYFRMIAKLPKLRELSLIECGLSNHFLHSFQPSNFNFSTSLSLDLSGNLLKGSTSNRFGLAMNSLQHLQLSFNMFKGKDLNSFMNICTLRSLYMYDNNMTEDLPSILRNFSNGCVRYSLQELQLSYNQITGSVPDLSIFSSLKSLYLSNNQLSGKIPQDTRWPSQLEHLSIGSNSLEDSVPMSFESTCHLESLDLSYNKLSEDLAVVFNHLSRCCRYSLRELYLRENKFNGALPDFSMFSKLEILDDLYLDRNKLNGTISEDLRFPTQLEELSLMSNSLKGVIKDSHFSNMSKLESLDLSDNSLVLKFSRNWAPSFQLGYIGLRSCKVGPLFPKWIQSQNKVSFLDISNNGISDTLPKWFWDKFELRYSININISYNNLQGMIPNLSLEIYFESFNLGSNQFEGPIPSFLRDSMYLDLSNNKFTDSFLFLCSGGVVGTLYQLDLSNNKLLGEIPNCWTHFKSLAYLNMSQNKFSGKIPTSMGSLLELQVLLLRNNNLAGEFSSSLRNCTKLVMLDMTENRLSGSIPDWIGSKFLELQFLSLGNNYFNGSLPLQICYLKSIHLLDLSLNNLSGQIPKCIKNFSSMTQVTSLRDYQGYLYLANTSHIRGNISYNLNAFLMWKGSEQMFKNNGLSLLKSIDLSSNQLSGEIPKEIENLFGLISLNLSRNHLTEKIPSNIGKLTSLEFLDLSRNQLAGSIPLSLAQIDRLTILDLSHNYLIGKIPTGTQLQSFDTSKYEGNVDLCGPPLKKLCIDKVLRQEPIANFHDKDNLIFNREFYTSMTIGFAMSFSRVFGSILIIRSWRHAYFKILSNLEYILYIMVAMKVFKWWQTR* 1070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1098 1069 Pfam Leucine Rich repeats (2 copies) 920 961 IPR025875 -
Pvu4g1098 1069 Pfam Leucine Rich Repeat 381 398 IPR001611 GO:0005515
Pvu4g1098 1069 Pfam Leucine Rich Repeat 107 128 IPR001611 GO:0005515
Pvu4g1098 1069 Pfam Leucine Rich Repeat 874 895 IPR001611 GO:0005515
Pvu4g1098 1069 ProSiteProfiles Leucine-rich repeat profile. 381 403 IPR001611 GO:0005515
Pvu4g1098 1069 Gene3D Ribonuclease Inhibitor 238 357 IPR032675 -
Pvu4g1098 1069 Gene3D Ribonuclease Inhibitor 3 141 IPR032675 -
Pvu4g1098 1069 Pfam Leucine rich repeat N-terminal domain 6 42 IPR013210 -
Pvu4g1098 1069 Gene3D Ribonuclease Inhibitor 142 237 IPR032675 -
Pvu4g1098 1069 PRINTS Leucine-rich repeat signature 874 887 - -
Pvu4g1098 1069 PRINTS Leucine-rich repeat signature 919 932 - -
Pvu4g1098 1069 SUPERFAMILY L domain-like 2 344 - -
Pvu4g1098 1069 Gene3D Ribonuclease Inhibitor 358 633 IPR032675 -
Pvu4g1098 1069 ProSiteProfiles Leucine-rich repeat profile. 945 967 IPR001611 GO:0005515
Pvu4g1098 1069 PANTHER BNAC08G45300D PROTEIN 143 199 - -
Pvu4g1098 1069 PANTHER BNAC08G45300D PROTEIN 281 352 - -
Pvu4g1098 1069 PANTHER BNAC08G45300D PROTEIN 2 137 - -
Pvu4g1098 1069 PANTHER BNAC08G45300D PROTEIN 465 1055 - -
Pvu4g1098 1069 PANTHER BNAC08G45300D PROTEIN 357 486 - -
Pvu4g1098 1069 SUPERFAMILY L domain-like 303 546 - -
Pvu4g1098 1069 SMART LRR_typ_2 531 558 IPR003591 -
Pvu4g1098 1069 SMART LRR_typ_2 80 105 IPR003591 -
Pvu4g1098 1069 SMART LRR_typ_2 871 894 IPR003591 -
Pvu4g1098 1069 SMART LRR_typ_2 427 450 IPR003591 -
Pvu4g1098 1069 SMART LRR_typ_2 919 942 IPR003591 -
Pvu4g1098 1069 SMART LRR_typ_2 379 403 IPR003591 -
Pvu4g1098 1069 SMART LRR_typ_2 165 189 IPR003591 -
Pvu4g1098 1069 SMART LRR_typ_2 302 325 IPR003591 -
Pvu4g1098 1069 SMART LRR_typ_2 895 918 IPR003591 -
Pvu4g1098 1069 PANTHER OS10G0469600 PROTEIN 281 352 - -
Pvu4g1098 1069 PANTHER OS10G0469600 PROTEIN 357 486 - -
Pvu4g1098 1069 PANTHER OS10G0469600 PROTEIN 2 137 - -
Pvu4g1098 1069 PANTHER OS10G0469600 PROTEIN 465 1055 - -
Pvu4g1098 1069 PANTHER OS10G0469600 PROTEIN 143 199 - -
Pvu4g1098 1069 Pfam Leucine Rich repeat 428 441 IPR001611 GO:0005515
Pvu4g1098 1069 Gene3D Ribonuclease Inhibitor 635 995 IPR032675 -
Pvu4g1098 1069 Pfam Leucine rich repeat 143 200 IPR001611 GO:0005515
Pvu4g1098 1069 ProSiteProfiles Leucine-rich repeat profile. 358 380 IPR001611 GO:0005515
Pvu4g1098 1069 SUPERFAMILY L domain-like 673 986 - -
Pvu4g1098 1069 SMART LRR_sd22_2 919 940 - -
Pvu4g1098 1069 SMART LRR_sd22_2 506 533 - -
Pvu4g1098 1069 SMART LRR_sd22_2 871 897 - -
Pvu4g1098 1069 SMART LRR_sd22_2 943 971 - -
Pvu4g1098 1069 SMART LRR_sd22_2 427 446 - -
Pvu4g1098 1069 SMART LRR_sd22_2 165 191 - -
Pvu4g1098 1069 SMART LRR_sd22_2 379 411 - -
Pvu4g1098 1069 SUPERFAMILY L domain-like 487 664 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1098 Pvu-Chr4 32456455 32460001 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1098 3 1045 Receptor kinase-like Gene Family AT2G15080 30.074 2.16e-86 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1098 - - gmx:100790492 1223.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g1098 4 32456455 32460001 Pvu4g1098 4 32456455 32460001 ECH