Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1079 ATGGAATCCCCAAACAAAGCCTCACTCCTCTTATTCCCTCTCTTATTCCTTTCCCTGTTCAGTCATTCCTATGGTGCAGGAATAGCTGTGTATTGGGGCCAAAACGGTGGAGAAGACAGCTTAGCAGATACTTGCAACACCAAAAACTTCCAATTTGTGAACATAGCTTTTTTGTCCACATTTGGCAATGGCCAAACCCCTCAACTGAACCTTGCAGGCCACTGTAATCCCCTCAGCAATGGTTGCCAAGGGTTGAGCAGTGACATCACAACATGCCAAAACGGTGGAGTCAAAGTGTTGCTCTCCCTTGGAGGAGGTGCTGGAAGCTACTCCCTCAACTCAGCTGAAGAAGCCAATCAACTTGCAACATACCTCTGGGACAATTTCCTTGGAGGACAATCCGGATCAAGACCATTAGGAGATGCAGTCTTGGATGGCATTGACTTTGACATTGAGTCTGGTGGGGGAGAGCATTGGGATGAACTAGCAAGGGCACTGAATGGCTTCAGTTCACAAAGAAAGGTGTACTTGTCTGCAGCCCCACAATGCATAATCCCTGATCAACAGTTAGATTCTGCCATCAAAACAGGGCTTTTTGACTATGTGTGGGTTCAGTTCTACAACAACCCTTCATGCCAATACTCTAGTGGAAATACCAACAACTTGATCAGTTCATGGAACCAGTGGATCACTGTGCCAGCCTCACAAGTCTTCATGGGGCTTCCTGCATCAGAAGCAGCTGCTCCAAGTGGTGGTTTTGTGCCAGCTGATGTGTTAACTTCTCAGGTTCTTCCTCAGATAAAACAGTCTTCAAAATATGGTGGACTCATGCTCTGGAGCAGATTCTTTGATCTCCAAAATAATTACAGTAATCAAATTATTGGCAATGTTTAA 894 0.4553 MESPNKASLLLFPLLFLSLFSHSYGAGIAVYWGQNGGEDSLADTCNTKNFQFVNIAFLSTFGNGQTPQLNLAGHCNPLSNGCQGLSSDITTCQNGGVKVLLSLGGGAGSYSLNSAEEANQLATYLWDNFLGGQSGSRPLGDAVLDGIDFDIESGGGEHWDELARALNGFSSQRKVYLSAAPQCIIPDQQLDSAIKTGLFDYVWVQFYNNPSCQYSSGNTNNLISSWNQWITVPASQVFMGLPASEAAAPSGGFVPADVLTSQVLPQIKQSSKYGGLMLWSRFFDLQNNYSNQIIGNV* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1079 297 PANTHER ACIDIC ENDOCHITINASE 14 296 - -
Pvu4g1079 297 CDD GH18_hevamine_XipI_class_III 26 295 IPR045321 -
Pvu4g1079 297 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 26 297 IPR001223 GO:0005975
Pvu4g1079 297 Gene3D Glycosidases 26 296 - -
Pvu4g1079 297 Pfam Glycosyl hydrolases family 18 28 282 IPR001223 GO:0005975
Pvu4g1079 297 PANTHER ENDOCHITINASE 14 296 - -
Pvu4g1079 297 SUPERFAMILY (Trans)glycosidases 26 293 IPR017853 -
Pvu4g1079 297 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 144 152 IPR001579 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1079 Pvu-Chr4 29924393 29926225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1079 9 297 Glycoside Hydrolase AT5G24090 58.419 1.95e-123 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1079 K01183 - gmx:100815291 484.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g1079 4 29924393 29926225 Pvu7g0801 7 7269770 7270959 PCT