Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1064 ATGGCCAGTTACTTGCTCAAATTATTGTTCCTGGTGTTTGTGTGCCTTACGCATACCAAAGTTTCCATTCTCGGATTCAACTCCCCATCACAGAGTTCATATGTGAAATGCAGAGAGAGGGAGAGACAAACACTCCTCAATTTCAAACAAAGTGTCCTAGATTTATATGGCATGCTCTCAACGTGGAGGGACGATGAAAATAACACAGATTGTTGTAAATGGAAAGGCATTCAATGCAACAATGTAACAGCTCATGTACAAGTACTTGATCTTCGTGGCTCAATTATGCATTATTTGATTGGTCCATTCAATCTCACTTTATTGGTTGACTTGCAAAAATTGGAATATTTGGATCTTAGTTCTCATCTTGATATTAGTGGCAGTCAAATCCCAGAGCAAATGGGCTCCTTCAAAAACTTAAGATATCTTAATCTATCATATGGGAACTTTTTTTGGGGAATCCCTTCTCAATTGGGAAATCTCTTCAAGATGGAGTATCTTGATCTTCAAGAAAATTCTCTCGACGGAGCAATCCTTTCTCAACTGGAAAATCTCTCAAAGTTGAAGTATCTTGATCTTAAAGAAACAAATCTTCAGGGAACCATCCCTTCTGAACTTGGGAAGCTTACAAGATTACGATATCTAGATCTAAGTGACAATGATAATCTCCAAGGAGAAATCCCTTATCAACTTGGAAATCTGTCACACTTGAGGTATCTTGATCTTGGTGAAAAATCATTTTCTGGAGCTATCCCTTTTCAGGTTGGAAATCTTCCTCTCTTGCACACTCTTAGACTTGGTGGTCGTTCTGGTCTTAAAATAAAAGATGAAAATTGGTTATTTTCTCTCTCTTCATTAAGAACACTAAGCTTGACATCGTTTCCTGATTTTGGCTCCTCTTGTCATATGATCAATGAGCTTATACCAAACTTAAGGGAGTTGAGGCTTGTTAATTGCAGTCTTTCTGATAATGATATTTCATCTTTGTTTCGTTCTGATTTCAACTTTTCCACTTCTCTTATTATCCTTGATCTCTCTCATAATATTTTGACTTCATCAGCACTTCAGTTATTGTTCAACTTCAGCTCCAAACTACAAGAACTTCATCTGAATCATTGCAACCTTATTGACCAAAGCTTTCTTATGTCGTCTGCTTCCATTAAAATGTCCCTGCCTTCACTTTTCACTCTTCATCTCTCCTCTAATCTATTAAAATCACCAGCTATATTTCATTGGATTTTTAACTACACTGCCAATCTTCGTAGCCTTGATCTTTCGGATAACTTGTTTGAAAGTCCCATTCCAAGTGGATTTGGGGAAGTGATTAACACTCTTGAATATCTTGACCTCTCTCATAACAAATTGCAAGGTGAGGTTCCATCTTCCCTTGGGAATATAAGCACATTGCAAAGTTTATCCCTTAGTTACAACAACTTCAGTGGGGAACTTCCTAGCTTCATTCAAAATTCTTCATTGCAAACTCTAGATTTATCTTTCAACCGGATTACCGGAATGCTGCCACCTAATCTTTTAGTCTTTACATCTTTGAGGTATTTAGATCTTTCCAACAATCAGTTAACTGGAGAAATACCCAAAAGCATTGGGTTGCTATATGAGTTGAAGTGTCTTTTCCTAAACGAGAATTACTTCAAGGGTGAAGTCAATGAATTCCATCTCACAAACTTGTCTAAATTGGTATGGTTGGACTTAACCGACAACTCATTGTCTCTAAAGTTTGCTACAACTTGGCTTCCACCTTTCCAATTACTTAGTTTAGGACTAGCTTCTTGCAAGTTGGGTCCTAGCTTCCCAAGTTGGCTCCAGACTCAAAGTCAGTTAACCTTTCTAGATATTTCTGATGCGGGGATTGATGACTTTGTGCCACATTGGTTTTGGAACAAGTTACAGTTTATAAGTGAGATGAATATTTCTTGCAACAGTCTCAAAGGTGCCATTCCAGATTTACCAATCAAGCTTAATAATGATGATTTGACAATTGTTTTCATTCTAAATTCAAATAAACTTGAAGGAGAAATTCCGGCTTTTTTGTCACAAGTTGACTCATTGGATCTTTCCAACAATGATATTTCGGATATAAATGCATTCGTGTGTGGAAAAATAGCAACTCCAAATATCCGCACTTTGGATTTGGCAAATAATCAAATAATGGGACAACTTCCCGACTGTTGGGAAAATTTAAATTCGTTAGAATTTCTTGATTTGAGCAATAATAAATTATCAGGAGAGATTCCAAAGTCCATGGGTACTCTTGTTAATTTGGAAGCTTTGGTCTTACGAAACAATAATTTAATTGGAGAGCTACCTTTGACACTGAAGAGTTGTGCTAGTTTGATTATATTTGACATGAGTCGAAATTTTTTGTCTGGTCCAATACCCTCATTTATTGGAGAAAATCTACAAGAGTTGAAAATCTTGACCATGCGAATAAATCGCTTCACTGGAAGTGTTCCTGTCCAAATTTGTTACTTGGGAAAAATTAATCTTTTGGATCTTTCGATGAATCACTTATCTGGAGGAATTCCAACATGTATGATGAATTTTACTGCATTGAAGGAAAGGAGCCTAATTCCAAGACAAATTGAAAGGAAACGAAAAATATCAGCTTTAGAGGCTAACTTTGATATTTATGACTTTAACGTGTTTCTAATGTGGAAAGGTCAGGATTACGAGTTCTGGAATCCAGAGACTCTTCTTAAGAGCATTGACCTTTCAAGTAATGATTTAACTGGCGAAGTACCCAAAGAGGTTGGATATTTACCTGGATTGGTTTCTTTAAATTTATCAAGAAACAACTTTCATGGAGAAATTCCTTCCGAAATTGGAAATTTAGGTTTGTTAGAATTTCTTGACTTATCAAGAAATAACTTCTCTGGTAATATTCCTTCCACTCTTTCCAACATTGATCGTCTTGGAATGTTAGACTTATCAAACAACAATCTGAGTGGAAGAATCCCTTGGGGAAGACAGTTGCAAACCTTTGACGCCTCTTGTTTTGAAGGAAATTTTGATCTTTGTGGTGAGCAACTCAACAAAAGTTGTCCTGGAGACAAGACAACACAAAAACCTCAAGAACAAGGGATTGATGGTGAAGAAGACAATTCAATTTTCTATGGAGCATTATACATGAGCTTGGGGTTAGGTTTCTTTGCAGGCTTTTGGGGCTTATTTGGGTCAATACTATTTTGGCAGCCATGGAGAATTGCTTATATGAGATTCTTGAACAGACTCACAGACTATATACTTCTAATGGCTGAACTGAACGTTGCCAACTGCCATAGGAGGATCAAAGGGTAG 3315 0.3686 MASYLLKLLFLVFVCLTHTKVSILGFNSPSQSSYVKCRERERQTLLNFKQSVLDLYGMLSTWRDDENNTDCCKWKGIQCNNVTAHVQVLDLRGSIMHYLIGPFNLTLLVDLQKLEYLDLSSHLDISGSQIPEQMGSFKNLRYLNLSYGNFFWGIPSQLGNLFKMEYLDLQENSLDGAILSQLENLSKLKYLDLKETNLQGTIPSELGKLTRLRYLDLSDNDNLQGEIPYQLGNLSHLRYLDLGEKSFSGAIPFQVGNLPLLHTLRLGGRSGLKIKDENWLFSLSSLRTLSLTSFPDFGSSCHMINELIPNLRELRLVNCSLSDNDISSLFRSDFNFSTSLIILDLSHNILTSSALQLLFNFSSKLQELHLNHCNLIDQSFLMSSASIKMSLPSLFTLHLSSNLLKSPAIFHWIFNYTANLRSLDLSDNLFESPIPSGFGEVINTLEYLDLSHNKLQGEVPSSLGNISTLQSLSLSYNNFSGELPSFIQNSSLQTLDLSFNRITGMLPPNLLVFTSLRYLDLSNNQLTGEIPKSIGLLYELKCLFLNENYFKGEVNEFHLTNLSKLVWLDLTDNSLSLKFATTWLPPFQLLSLGLASCKLGPSFPSWLQTQSQLTFLDISDAGIDDFVPHWFWNKLQFISEMNISCNSLKGAIPDLPIKLNNDDLTIVFILNSNKLEGEIPAFLSQVDSLDLSNNDISDINAFVCGKIATPNIRTLDLANNQIMGQLPDCWENLNSLEFLDLSNNKLSGEIPKSMGTLVNLEALVLRNNNLIGELPLTLKSCASLIIFDMSRNFLSGPIPSFIGENLQELKILTMRINRFTGSVPVQICYLGKINLLDLSMNHLSGGIPTCMMNFTALKERSLIPRQIERKRKISALEANFDIYDFNVFLMWKGQDYEFWNPETLLKSIDLSSNDLTGEVPKEVGYLPGLVSLNLSRNNFHGEIPSEIGNLGLLEFLDLSRNNFSGNIPSTLSNIDRLGMLDLSNNNLSGRIPWGRQLQTFDASCFEGNFDLCGEQLNKSCPGDKTTQKPQEQGIDGEEDNSIFYGALYMSLGLGFFAGFWGLFGSILFWQPWRIAYMRFLNRLTDYILLMAELNVANCHRRIKG* 1105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1064 1104 Gene3D Ribonuclease Inhibitor 196 299 IPR032675 -
Pvu4g1064 1104 ProSiteProfiles Leucine-rich repeat profile. 491 512 IPR001611 GO:0005515
Pvu4g1064 1104 Gene3D Ribonuclease Inhibitor 37 195 IPR032675 -
Pvu4g1064 1104 SMART LRR_typ_2 513 537 IPR003591 -
Pvu4g1064 1104 SMART LRR_typ_2 926 950 IPR003591 -
Pvu4g1064 1104 SMART LRR_typ_2 733 757 IPR003591 -
Pvu4g1064 1104 SMART LRR_typ_2 683 704 IPR003591 -
Pvu4g1064 1104 SMART LRR_typ_2 391 412 IPR003591 -
Pvu4g1064 1104 SMART LRR_typ_2 137 161 IPR003591 -
Pvu4g1064 1104 SMART LRR_typ_2 185 209 IPR003591 -
Pvu4g1064 1104 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 206 438 - -
Pvu4g1064 1104 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 391 461 - -
Pvu4g1064 1104 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 535 1090 - -
Pvu4g1064 1104 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 444 532 - -
Pvu4g1064 1104 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 35 171 - -
Pvu4g1064 1104 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 171 229 - -
Pvu4g1064 1104 SUPERFAMILY L domain-like 411 654 - -
Pvu4g1064 1104 Gene3D Ribonuclease Inhibitor 442 487 IPR032675 -
Pvu4g1064 1104 PRINTS Leucine-rich repeat signature 516 529 - -
Pvu4g1064 1104 PRINTS Leucine-rich repeat signature 733 746 - -
Pvu4g1064 1104 ProSiteProfiles Leucine-rich repeat profile. 515 537 IPR001611 GO:0005515
Pvu4g1064 1104 Pfam Leucine Rich repeats (2 copies) 491 527 IPR025875 -
Pvu4g1064 1104 Gene3D Ribonuclease Inhibitor 488 580 IPR032675 -
Pvu4g1064 1104 SUPERFAMILY RNI-like 117 440 - -
Pvu4g1064 1104 Pfam Leucine rich repeat 164 221 IPR001611 GO:0005515
Pvu4g1064 1104 Pfam Leucine rich repeat 419 479 IPR001611 GO:0005515
Pvu4g1064 1104 Pfam Leucine rich repeat 685 746 IPR001611 GO:0005515
Pvu4g1064 1104 Gene3D Ribonuclease Inhibitor 581 1023 IPR032675 -
Pvu4g1064 1104 SMART LRR_sd22_2 489 521 - -
Pvu4g1064 1104 SMART LRR_sd22_2 161 187 - -
Pvu4g1064 1104 SMART LRR_sd22_2 709 735 - -
Pvu4g1064 1104 SMART LRR_sd22_2 209 225 - -
Pvu4g1064 1104 SMART LRR_sd22_2 442 468 - -
Pvu4g1064 1104 SMART LRR_sd22_2 683 701 - -
Pvu4g1064 1104 Pfam Leucine rich repeat N-terminal domain 40 80 IPR013210 -
Pvu4g1064 1104 Gene3D Ribonuclease Inhibitor 300 441 IPR032675 -
Pvu4g1064 1104 PANTHER OS10G0469600 PROTEIN 535 1090 - -
Pvu4g1064 1104 PANTHER OS10G0469600 PROTEIN 391 461 - -
Pvu4g1064 1104 PANTHER OS10G0469600 PROTEIN 206 438 - -
Pvu4g1064 1104 PANTHER OS10G0469600 PROTEIN 171 229 - -
Pvu4g1064 1104 PANTHER OS10G0469600 PROTEIN 35 171 - -
Pvu4g1064 1104 PANTHER OS10G0469600 PROTEIN 444 532 - -
Pvu4g1064 1104 SUPERFAMILY L domain-like 668 1002 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1064 Pvu-Chr4 29324735 29328049 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1064 34 775 Miscellaneous Gene Families AT1G74190 28.914 4.62e-49 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1064 - - vra:106761221 1263.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g1064 4 29324735 29328049 Pvu4g1064 4 29324735 29328049 ECH