Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1027 ATGAATCCACCCTTGTTCCTCCACCTTAGGCACGGCGGTTTCGTGCCCTGCTCCCAGAGATCACGTAGCCTACGCACATTCTCTGGCGTTTTGGATCCTTCTACCCCACTTGGTGTAGCTTTAACCGAGGCCAGTCCTCTCTTCTCCGGTGAAGAGCTGCCCACACTACTTGGTTCGCCGGAACCCCCAAAATGTGATTCCAACCAAGGCTCAATAACCTCGAACAGACTTGTGAACCATTCGTTATTCAGCTTAATAATCTCTTCCATCCGTTCTCCTTCTTTAGGGGTCAAGAGAACGAGATTATCACCCAAGTATCTCACCTTAATCCTAGACATACCTCCTTTAATAAACTCCTCACATAAGGACACAAAGTTCATAATTGGAGCCATCCGACCTGCTGCACTGTTTGACATCCAAGGTAAAACAGTTGAGGAGGTTTCAAAACTTGGACCTTTGTCTACTCTCCATTCCTTAACAATTCTTAAGCTGAGGTCATTGCATACTCTTAGTTCCTCTCACCAGTGGCTACAAACTATCACTAAAATCATTCAAAACTTAACTGAGCTAAGGCTAGTTGATTGTCATCTTTCGGATAATGATATTCAATCTTTGTTCCATTCTCACTCTTCCAACAACTCCATTTCTCTTAACATCCTAGATCTCTCTTCTAATATTTTGACATCATCAACACTTCAACTCTGTTTTCCGTCTCTTAAGATCCTCGACCTCTTTTATAATAATCTAACATCATTAATGTTTCTAGGGAATTTTAATATCAGCTCCAAACTGCAAGAGCTTTATCTTGTAAACTGCAGAATTATAGATAGAAGTTTCCTCGTTTCATCTAGTTCTACAATGAAAATGAATCCTTTGTCTTCTAATTTCTACCTTGTTCTCTCTGATAACTTGTTAAAGTCATGCTCTATATTTCACTGGCTTTCTAACTTCTCCACCGATCTGCATGGCATTGACCTTAGTGGTAACTTGTTAGAAGGTCCCATTCCAGATGAATTTGGGAAAGTGATAAACTCTCTTCAGTATCTTTCTCTCTCCAATAACAAACTCCATGGCAAGGTTCCCTCTTTGTTTGGGAGCATGTGCAGATTAGAGATATTAGACCTCTCAAATAACGAGTTAAATGGCGAATTTCCGAGCTTCATTAAAAATTCTTCATGGTGCAACAGACACATATTTCACAGGTTGAACTTATCTTATAATCAAATTACCGGCAAGATACCCAAGAACATCAGCCTGCTATCCGAGCTGGGGATTTTATCGTTGGAGTGGAATTCTTTAGAGGGTGATGTCACTGAATCTCATCTTTCCAGTTTTTCCAAATTAATTTCATTATTCTTGTCACACAACTCATTGTCTCTAAAATTTACCTCTAGTTGGGTTCCTCCTTTCCAATTAATGCACATATTTATTGCATCTTGCAACGTAGGTCCGAACTTTCCTAGTTGGCTCCAGACTCAAAATTCTGTTGTCCAATTAGATATATCTGATAATGGGCTGAATGATTTTGTTCCAGAATGGTTTTGGAAGAAGCTGCAAATTCTGCATACTTTGAATATGTCTCACAATAGTCTCATTGGAAAAGTTCCATTATTTTTGCTACAGGCTTCCGAGCTGTTACTCTCTGGAAATAAATTTTCAGATTTCTTATGTGGAAACGTCACAGCTGCAAACTTGGCCACTTTAGATTTATCATATAATCAAATAAAGGGGCAACTTCCAGATTGTTGGAAATATGTAAATCGATTATTGTTTCTTGATTTAAGCAGCAATCAATTCTTAGTTTTGGCAAACAATAGTTTAATAGCTGAATTGCCTTCCTCTTTGAAGAACTGCAATACTTTAATTATGTTGGATGTGAGTGAGAATATGTTGTCAGGTCCAATACCATCATGGGTTGGAGAAAGCATGCAGCAATTGATAATATTGATCATGCGAGGGAATCACATCTCTGGAAATCTTCCCCTTCATCTATGTTATTTGAAGCATATTCAATTGTTGGATCTTTCAAGGAATAAGTTATCAGAAGGAATTCCAACTTGCTTAAACAATCTTACTGCATTGTCTGAAAAGAGAATTAACAGAACTGAAACCGAAAGTCGTGTTCATTGGTACAACAGTACTTACTCTGAAATTTATAATTTTGTGCGTGTTAGTTATTATAAGCTTCATATAACATTGATGTGGAAAGGTGTGGAACGCAGCTTCACTCAGCCCGAATTGATTCTTCAGAGCATTGATCTCTCATGTAACAATTTAATAGGTGAAATGCCAAAAGAGATTACATATCTGCTCGGGTTAGTTTCTTTGAATTTATCAAGAAACAATTTGAGTGGAAAAATTCCTTTTGAGATTGGAAATTTAAGTTCACTTGAATCCCTTGACCTGTCAAGAAATCATTTCTATGGGAGAATTCCTTCTTCTCTTTCTCAATTGGATTTTCTCCAAAAATTAGACTTGTCACAGAACTCCCTTTCCGGAAGAATCCCATTGGGAAGACACTTGGATACATTTGATGCCACTTGTTGTCCTGGAGATGAGACAGTGATAAAGAGTAAAGGAGCAGAAGAGCATGATGAAGATGATGATTCAGTTTTCTATAGAGCATTATACATGAGTTTGGGGCTAGGATTCTTCACAGGCTTTTGGGGCTTATTAGGAACATTTCTACTTTGGCAACCATGGAGAATTGCTTACTTGAGGTTCTTGAATAGACTCGTAGACCATCTACTTTACTTATTTCTGTGTTTCAGTTAA 2775 0.3809 MNPPLFLHLRHGGFVPCSQRSRSLRTFSGVLDPSTPLGVALTEASPLFSGEELPTLLGSPEPPKCDSNQGSITSNRLVNHSLFSLIISSIRSPSLGVKRTRLSPKYLTLILDIPPLINSSHKDTKFIIGAIRPAALFDIQGKTVEEVSKLGPLSTLHSLTILKLRSLHTLSSSHQWLQTITKIIQNLTELRLVDCHLSDNDIQSLFHSHSSNNSISLNILDLSSNILTSSTLQLCFPSLKILDLFYNNLTSLMFLGNFNISSKLQELYLVNCRIIDRSFLVSSSSTMKMNPLSSNFYLVLSDNLLKSCSIFHWLSNFSTDLHGIDLSGNLLEGPIPDEFGKVINSLQYLSLSNNKLHGKVPSLFGSMCRLEILDLSNNELNGEFPSFIKNSSWCNRHIFHRLNLSYNQITGKIPKNISLLSELGILSLEWNSLEGDVTESHLSSFSKLISLFLSHNSLSLKFTSSWVPPFQLMHIFIASCNVGPNFPSWLQTQNSVVQLDISDNGLNDFVPEWFWKKLQILHTLNMSHNSLIGKVPLFLLQASELLLSGNKFSDFLCGNVTAANLATLDLSYNQIKGQLPDCWKYVNRLLFLDLSSNQFLVLANNSLIAELPSSLKNCNTLIMLDVSENMLSGPIPSWVGESMQQLIILIMRGNHISGNLPLHLCYLKHIQLLDLSRNKLSEGIPTCLNNLTALSEKRINRTETESRVHWYNSTYSEIYNFVRVSYYKLHITLMWKGVERSFTQPELILQSIDLSCNNLIGEMPKEITYLLGLVSLNLSRNNLSGKIPFEIGNLSSLESLDLSRNHFYGRIPSSLSQLDFLQKLDLSQNSLSGRIPLGRHLDTFDATCCPGDETVIKSKGAEEHDEDDDSVFYRALYMSLGLGFFTGFWGLLGTFLLWQPWRIAYLRFLNRLVDHLLYLFLCFS* 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1027 924 SUPERFAMILY Outer arm dynein light chain 1 155 276 - -
Pvu4g1027 924 PANTHER OS10G0469600 PROTEIN 106 918 - -
Pvu4g1027 924 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 106 918 - -
Pvu4g1027 924 ProSiteProfiles Leucine-rich repeat profile. 238 259 IPR001611 GO:0005515
Pvu4g1027 924 Gene3D Ribonuclease Inhibitor 402 859 IPR032675 -
Pvu4g1027 924 SMART LRR_typ_2 586 609 IPR003591 -
Pvu4g1027 924 SMART LRR_typ_2 367 395 IPR003591 -
Pvu4g1027 924 SMART LRR_typ_2 794 818 IPR003591 -
Pvu4g1027 924 SMART LRR_typ_2 667 691 IPR003591 -
Pvu4g1027 924 SMART LRR_typ_2 343 366 IPR003591 -
Pvu4g1027 924 SMART LRR_typ_2 236 256 IPR003591 -
Pvu4g1027 924 PRINTS Leucine-rich repeat signature 370 383 - -
Pvu4g1027 924 PRINTS Leucine-rich repeat signature 667 680 - -
Pvu4g1027 924 Pfam Leucine rich repeat 749 807 IPR001611 GO:0005515
Pvu4g1027 924 Pfam Leucine rich repeat 321 380 IPR001611 GO:0005515
Pvu4g1027 924 SUPERFAMILY L domain-like 307 551 - -
Pvu4g1027 924 Gene3D Ribonuclease Inhibitor 137 307 IPR032675 -
Pvu4g1027 924 Gene3D Ribonuclease Inhibitor 308 393 IPR032675 -
Pvu4g1027 924 SUPERFAMILY L domain-like 543 845 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1027 Pvu-Chr4 27358643 27363188 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1027 320 845 Receptor kinase-like Gene Family AT4G04220 32.348 5.42e-61 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1027 - - pvu:PHAVU_004G096400g 1742.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g1027 4 27358643 27363188 Pvu4g1027 4 27358643 27363188 ECH