Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0867 ATGGCGATCGACTGTCAACAGCGACAATCAACAATCAACGATACAAGGTGGTCAATGAAAACAAAGGTTGCAACAATGAAGGTTGTACAGAGAAAATGCATAAGCATAATCTTCGAGGATCGGAATGATGGTTCAGTTGAAACACATGATGCTTTCAACACCTTCTTCAGTGAAATTGGGACTGGCCAATATGTACCTAGGGCATTGTTTGTTGATCTGGAGCCTACTGTAATTGATGAAGTAAGATGTGGTCCTTACAAACAACTCTTCCATCCTGAACAATTAATGTCTGGCAAGGAAGATGCTGCTAATAACTTTGCAAGGGGACATTACACCGTTGGAAAAGAAATTGAAGAGTTGTGCCTTGACCGTATCAGAAAATTAGCTGACAATTGCACTGGCTTGCAAGGATTCTTGGTTTTCAATGCTGTTGGTGGTGGCACTGGTTCTGGCTTGGGATCATTGCTTTTGGAACGTTTGTCTGTAGATTATGGAAAGAAGTCAAAACTTGGCTTCATCATTTATCCTTCTCCTCAGGTATCTACTGCAGTTGTTGAACCTTACAATACTGTTCTTTCCAATCACTCTCTTATTGAGCACAGTGATGTAGTTGTTCTCTTGGACAATGAAGCAATATATGACATATGCAGAAGATCACTAGACATAGAAAGACCAACTTACACCAACTTGAACCGCTTGATATCTCAAATAATATCTTCCTTGACCACTTCCTTGAGATTTGATGGTGCAATCAATGTGGACATTTCAGAGTTCCAGACCAACCTTGTGCCTTATCCACGCATCCATTTCATGCTCTCATCTTATGCCCCAGTTATATCTTCTGCCAAGGCCTTCCATGAGCAGCTATCAGTGCCTGAGATCACCAGAGCTGTGTTTGAGCCATCAAGCATGATGGTCAAGTGTGATCCCAGACATGGAAAGTACATGGCCTGTTGCCTCATGTATCGTGGGGATATTGTGCCAAAAGATGTTAACCTTGCTGTCTCAAATATCAAGACAAAGAGACAAGTTCAATTTGTTGACTGGTGCCCTACTGGTTTCAAGTGTGGTATAAACTACCAGGCTCCAACAGTGGTACCAGAAGGTGACCTTGCAGAGGTGAAGAGAGCAGTTTGTATGATTAGCAACAACACAGCTGTGGTTGAGGTTTTCTCTCGCATTGACCACAAATTTGACCTCATGTTTGCCAAAAGGGCCTTTGTGCACTGGTATGTGAGTGAAGGCATGGAAGAAGGTGAGTTCTCAGAAGCAAGGGAGGATCTTGCTGCCCTTGAAAAGGACTATGAGGAAGTTGGGGATGAAGGTGTGGATGAAGAAGTTGAAGGTTACTGA 1353 0.4279 MAIDCQQRQSTINDTRWSMKTKVATMKVVQRKCISIIFEDRNDGSVETHDAFNTFFSEIGTGQYVPRALFVDLEPTVIDEVRCGPYKQLFHPEQLMSGKEDAANNFARGHYTVGKEIEELCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFIIYPSPQVSTAVVEPYNTVLSNHSLIEHSDVVVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTSLRFDGAINVDISEFQTNLVPYPRIHFMLSSYAPVISSAKAFHEQLSVPEITRAVFEPSSMMVKCDPRHGKYMACCLMYRGDIVPKDVNLAVSNIKTKRQVQFVDWCPTGFKCGINYQAPTVVPEGDLAEVKRAVCMISNNTAVVEVFSRIDHKFDLMFAKRAFVHWYVSEGMEEGEFSEAREDLAALEKDYEEVGDEGVDEEVEGY* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0867 450 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 145 151 IPR017975 GO:0005525|GO:0005874|GO:0007017
Pvu4g0867 450 SUPERFAMILY Tubulin C-terminal domain-like 249 440 IPR008280 -
Pvu4g0867 450 Pfam Tubulin C-terminal domain 266 395 IPR018316 -
Pvu4g0867 450 SMART Tubulin_4 52 249 IPR003008 GO:0005525
Pvu4g0867 450 SUPERFAMILY Tubulin nucleotide-binding domain-like 47 247 IPR036525 -
Pvu4g0867 450 PRINTS Alpha-tubulin signature 48 61 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Pvu4g0867 450 PRINTS Alpha-tubulin signature 91 104 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Pvu4g0867 450 PRINTS Alpha-tubulin signature 123 131 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Pvu4g0867 450 PRINTS Alpha-tubulin signature 151 163 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Pvu4g0867 450 PRINTS Alpha-tubulin signature 164 175 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Pvu4g0867 450 PRINTS Alpha-tubulin signature 217 229 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Pvu4g0867 450 PRINTS Alpha-tubulin signature 277 292 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Pvu4g0867 450 PRINTS Alpha-tubulin signature 324 345 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Pvu4g0867 450 PRINTS Alpha-tubulin signature 350 363 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Pvu4g0867 450 PRINTS Alpha-tubulin signature 363 382 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Pvu4g0867 450 PRINTS Alpha-tubulin signature 388 404 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Pvu4g0867 450 PRINTS Alpha-tubulin signature 425 441 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Pvu4g0867 450 Gene3D - 272 386 IPR037103 -
Pvu4g0867 450 CDD alpha_tubulin 50 438 - -
Pvu4g0867 450 SMART Tubulin_C_4 251 396 IPR018316 -
Pvu4g0867 450 Coils Coil 421 441 - -
Pvu4g0867 450 PANTHER TUBULIN 45 448 IPR000217 GO:0005874|GO:0007017
Pvu4g0867 450 Pfam Tubulin/FtsZ family, GTPase domain 44 216 IPR003008 GO:0005525
Pvu4g0867 450 Gene3D Tubulin/FtsZ, GTPase domain 23 271 IPR036525 -
Pvu4g0867 450 PRINTS Tubulin signature 56 75 IPR000217 GO:0005874|GO:0007017
Pvu4g0867 450 PRINTS Tubulin signature 98 109 IPR000217 GO:0005874|GO:0007017
Pvu4g0867 450 PRINTS Tubulin signature 111 135 IPR000217 GO:0005874|GO:0007017
Pvu4g0867 450 PRINTS Tubulin signature 137 155 IPR000217 GO:0005874|GO:0007017
Pvu4g0867 450 PRINTS Tubulin signature 156 177 IPR000217 GO:0005874|GO:0007017
Pvu4g0867 450 PRINTS Tubulin signature 181 194 IPR000217 GO:0005874|GO:0007017
Pvu4g0867 450 PRINTS Tubulin signature 195 215 IPR000217 GO:0005874|GO:0007017
Pvu4g0867 450 PRINTS Tubulin signature 383 411 IPR000217 GO:0005874|GO:0007017
Pvu4g0867 450 Gene3D Helix hairpin bin 387 439 IPR023123 -
Pvu4g0867 450 PANTHER TUBULIN ALPHA CHAIN 45 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0867 Pvu-Chr4 13979892 13982956 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0867 K07374 - gmx:100780531 744.577
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1160 1 30780944 30783995 Pvu4g0867 4 13979892 13982956 PCT