Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0792 ATGCTTGCTTCCGAAGGAATAAAAAGGACTGAAATGAATAGAGATGAATTCACAAAAAGGGTTTGGCAGTGGAAAGAGAAATATGGTGGAACTATCGCAAACCAGATCAAGAGACTTGGTGCTTCTTGTGATTGGTCTAGAGAGCACTTTACTCTTGATGAGCAGCTAAGTCAAGCTGTAGTTGAGGCATTTGTTAGACTTCATGAGAAAGGTTTGATTTATCAAGGTTCATATATGGTAAACTGGTCACCTACTCTACAAACTGCTGTTTCTGACTTGGAAGTTGAATATTCTGAAGAGTCTGGATTTCTGTATTATATCAAGTACCGGGTTGCCGGAAGGAGTGACTTCTTGACTGTGGCTACAACACGACCAGAGACTTTATTTGGTGATGTGGCACTAGCAGTTCATCCGGAGGATGATCGATATTCCAAGTATATTGGTATGATGGCAATTGTACCTCAAACATTTGGCCGGCATGTTCCTATCATTGATAATAAGCATGTTGATAAAGATTTTGGAACTGGAGTGTTGAAAATTAGTCCAGGACATGACCACGATGACTATTTGCTTGCTCGAAAACTTGGTCTTCCTATTCTTAATGTGATGAATAAGGATGGAACACTAAATGATGTTACTGGGTTGTACAGTGGCCTTGATCGTTTTGAGGGTCGGAAAAAGTTATGGGCAGAGCTTGAGGAGACAGGATTAGCTGTGAAAAAGGAACCCCACACATTACGAGTTCCCAGATCTCAACGCGGTGGAGAAGTGATAGAGCCACTTGTTAGTAAGCAGTGGTTTGTGAGTATGGAGCCTCTTGCTGAGAAAGCACTTCAAGCAGTTGAAAAGAGAGAACTGATTATAGTTCCAGAAAGATTTGAGAAGATTTACAACCATTGGCTCTCCAACATTAAGGATTGGTGTATAAGCAGACAACTATGGTGGGGACACAGGATACCTGTATGGTACATTGCTGGAAAAGACAATGAAGAGGAATATATAGTTGCTAGAAATGCTAAGGAAGCACTTGAGAAAGCTAACAAGAGATATGGGAAGGATGTAGAAATATATCAAGATCCTGATGTTCTTGATACTTGGTTTTCTAGCGCGCTTTGGCCTTTTAGTACCCTTGGATGGCCAGATATATGTGCAGAGGATTTTAAGCGATTCTATCCTACTACAATGCTTGAAACTGGGCATGACATATTGTTCTTTTGGGTGGCAAGAATGGTGATGATGGGGATTGAATTCACCGGAAAGGTTCCATTTTCTTATGTTTATTTGCATGGACTCATCAGGGATTCACAGGGCAGAAAAATGTCTAAAACATTGGGAAATGTAGTGGACCCCCTTGACACTATCAAAGAATTTGGGACAGATGCTTTACGTTTCACACTAGCTTTAGGCACAGCTGGCCAGGACCTTAATTTGTCGACTGAGCGGTTGACCTCCAACAAAGCCTTCACAAACAAATTGTGGAATGCTGGCAAATTTATATTGCAGAACCTGCCTAATGAGAATGATGCTTCTGCTTGGGAAAAAATATTGTCTTATAAGTTTGACAATGAAGACACTGTGGTTAATCTTCCTTTACCTGAGTGTTGGGTGGTGTCAAAACTTCACTTGCTCATTGAATCTGTCACTGCAAGCTATGACAAATTTTACTTTGGAGAAGTGGGACGAGAAACATATGACTTCTTTTGGGCTGATTTTGCTGATTGGTACATTGAGGCTAGTAAAGGGCGTCTTTACCACTCTGGAGTTGGAGACAACTCTGTTGCTTCAGTGGCACAGGCTGTTCTGTTATATACTTTTGAGAACATACTCAAAGTTTTGCATCCTTTCATGCCATTTGTAACTGAGGAGTTGTGGCAGGCACTCCCTAACCGGAAACATGCTCTTATTGTATCACCTTGGCCAGAGACTCAACTTCCAAGAGACACCAGCTCTATAAAAAAGTTTGAAAATTTGCAGGCTTTGTCATATTTTTGGTTTAGAGCTATCAGGAATGCTCGGGCAGAATATGTTGTTGAGCCGGCAAAACGTATATCAGCATCTGTAGTTGCAAACAATGAAGTTATAGACTATATTGCTGAAGAACGAGAGGTTCTAGCTCTTCTCTCTCGGCTAGATTTACAAAATCTGGAATTCACAGATTCTTCTCCAGGAAATGCAGATCAGTCAGTTCATGTTGTGGCTGGAGAGGGACTAGAGGCGTATCTCCCTCTGGCCGATATGGTTGATATTTCTGCAGAAGTTGAACGACTTTCAAAGCGTCTTTCCAAGATGCAGAAGGAGTACGATGCGTTAAAATCTAAACTCAATTCTCCTCAATTTGTAAAGAAGGCACCGGAAGACGTGGTCCTCGGGGTGCAAGAAAAAGCCACAGAAGCAGAAGAGAAGATCAATTTAACAAAGAAACGACTTGAATTCCTGAGAACTAACGTTGTAGTGTCACAATAG 2463 0.4133 MLASEGIKRTEMNRDEFTKRVWQWKEKYGGTIANQIKRLGASCDWSREHFTLDEQLSQAVVEAFVRLHEKGLIYQGSYMVNWSPTLQTAVSDLEVEYSEESGFLYYIKYRVAGRSDFLTVATTRPETLFGDVALAVHPEDDRYSKYIGMMAIVPQTFGRHVPIIDNKHVDKDFGTGVLKISPGHDHDDYLLARKLGLPILNVMNKDGTLNDVTGLYSGLDRFEGRKKLWAELEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVSMEPLAEKALQAVEKRELIIVPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIAGKDNEEEYIVARNAKEALEKANKRYGKDVEIYQDPDVLDTWFSSALWPFSTLGWPDICAEDFKRFYPTTMLETGHDILFFWVARMVMMGIEFTGKVPFSYVYLHGLIRDSQGRKMSKTLGNVVDPLDTIKEFGTDALRFTLALGTAGQDLNLSTERLTSNKAFTNKLWNAGKFILQNLPNENDASAWEKILSYKFDNEDTVVNLPLPECWVVSKLHLLIESVTASYDKFYFGEVGRETYDFFWADFADWYIEASKGRLYHSGVGDNSVASVAQAVLLYTFENILKVLHPFMPFVTEELWQALPNRKHALIVSPWPETQLPRDTSSIKKFENLQALSYFWFRAIRNARAEYVVEPAKRISASVVANNEVIDYIAEEREVLALLSRLDLQNLEFTDSSPGNADQSVHVVAGEGLEAYLPLADMVDISAEVERLSKRLSKMQKEYDALKSKLNSPQFVKKAPEDVVLGVQEKATEAEEKINLTKKRLEFLRTNVVVSQ* 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0792 820 SUPERFAMILY ValRS/IleRS/LeuRS editing domain 98 249 IPR009008 GO:0002161|GO:0006418
Pvu4g0792 820 Gene3D HUPs 1 109 IPR014729 -
Pvu4g0792 820 Gene3D - 145 209 IPR009008 GO:0002161|GO:0006418
Pvu4g0792 820 Pfam tRNA synthetases class I (I, L, M and V) 5 478 IPR002300 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Pvu4g0792 820 CDD ValRS_core 1 477 - -
Pvu4g0792 820 Gene3D - 436 678 - -
Pvu4g0792 820 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 490 763 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Pvu4g0792 820 Pfam Anticodon-binding domain of tRNA ligase 535 683 IPR013155 GO:0004812|GO:0006418
Pvu4g0792 820 Pfam Valyl tRNA synthetase tRNA binding arm 748 812 IPR019499 GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438
Pvu4g0792 820 PRINTS Valyl-tRNA synthetase signature 137 154 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Pvu4g0792 820 PRINTS Valyl-tRNA synthetase signature 253 266 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Pvu4g0792 820 PRINTS Valyl-tRNA synthetase signature 359 380 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Pvu4g0792 820 PRINTS Valyl-tRNA synthetase signature 391 409 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Pvu4g0792 820 Coils Coil 795 815 - -
Pvu4g0792 820 Coils Coil 329 349 - -
Pvu4g0792 820 Gene3D - 741 812 IPR037118 -
Pvu4g0792 820 Coils Coil 746 773 - -
Pvu4g0792 820 PANTHER VALYL-TRNA SYNTHETASES 1 813 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Pvu4g0792 820 PANTHER VALYL-TRNA SYNTHETASE, ISOFORM C 1 813 - -
Pvu4g0792 820 TIGRFAM valS: valine--tRNA ligase 4 790 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Pvu4g0792 820 CDD Anticodon_Ia_Val 477 627 IPR033705 -
Pvu4g0792 820 Gene3D - 110 144 IPR009008 GO:0002161|GO:0006418
Pvu4g0792 820 SUPERFAMILY Nucleotidylyl transferase 4 484 - -
Pvu4g0792 820 Gene3D HUPs 210 435 IPR014729 -
Pvu4g0792 820 SUPERFAMILY tRNA-binding arm 748 812 IPR010978 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0792 Pvu-Chr4 11662983 11692436 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0792 K01873 - gmx:100818869 1534.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g0792 4 11662983 11692436 Pvu4g0792 4 11662983 11692436 ECH