Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0520 ATGGGAAGTCAAAAGAATTTCACAATTTCTGTTTTGTCTCCAGATGAAAGTTGGGATCTTTTTCATGATATGGTTGATAAAAATATTTCAACCAAGCTTGATATTTATCACATAGCAAAAGAGGTTGCAAATGAATGTGGAGGTTTGCCAATTGCCATTGTAACAATGGCAAAAGCATTAGCAAATAAAGAAAAACATATATGGGAAGATGCACTGGATCAATTAAAAAACTCCTCCATCAATTCTCTTTTAGGAATGCAAGCTTACGTATATTCAAGTATCAAGTTGAGTTACAATTTTTTAGATAATGAGGAAGACAAAAAAATTCTTTTCCTTTGTTGCTTATTTCCAGAAGACTTTGACATTCCTATAGAAATTCTACTCAGGCATGGAATGGGTTTGAGATTCTTTAAAGGCATTGATGCATTGTGGAAAGTTAGAAATCGAGTGCATACCATTGTTGATAAACTTAAAAGACGTTTCATGTTGTTAGATGGTAATGTAGAAGAGTGTGTCAAAATGCATGATATTGTACGTGATGTTATCAGATCAATTGCATCTACAGAAGAATATGGTTTTGTCGTACATGTTTCACTTATCTTGGAAGAAGCAAAAGAATACCCTAAAATGTTAAATTGTCAAAAGCTTAATCTTTTGCAAATAACATCAAAGAAAATGGATTTGGTTCCAGAAAATTACCTTCAATGTGTTAATAAGCTTATGGTGCTCAATCTTCAAAATTTGTGCATTCATTCAATGTCTTTTGCATTTCAAGCTTTGGACAACATTCACACTCTACTACTCGAAGATTGTCATGTTGGAGATATATCTATAATTGGTAAGCAACTCAAAAAGCTTGAGATTCTTAGCTTTTCTAACTCAAATATTAAGCAATTGCCAGAAGAAATTGGACAACTAAGATCGCTAAGGTTATTAGATTTGACTGAATGCAACTATCTCATTCAAATATCAACTAATGTCTTGGCAAACTTATCTAGACTAGAAGAACTCTATCTCAGAGTAAGGAATCTTCCTTCTAAGGAAAATAATCACATTCTTTTTGAGTTACTGTCTTTATCTCATCATCTGAAGGTCGTAGAGATTGCAATTTTGACAAATGAAGATTTACCCAAAGATTTGTTCTTCGAAAATATTGAGAGATTTTGGGTCTATCTTGGAGATTCATCTACCTTTTTTAATGGAATTGTTCGAAAAGGATACTTACACCCAAATATTTTGAAACTAAATAATTCATATTACAAATATGTCAAGGAAAGTGTGACCATTCAACAATTACTTCAAAAAGTTGAAATTCTCAACTTGGTTGATATAAAAAACATGAAAAATGTCATCTTGGAATTAAATGAAAGGGGTTTTCCATTTTTGAAGCATCTAAGTATCGAGTTTTGCAACAACCTTGAATATGTTGTAGATGCATTTGACGGTTGTATCTTTCCTCAACTTCTATCATTCTCTTTACGTAGTTTGGATAATTTAAAAGAGATATTCAATGTCATTAGTCACATGAGTCAAGCAAATGACTTTACAAAGGCTAACTCCATCACTTCATCTCAATGCTTTGGATCCCTTACAAAACTTAAAATAGAATATTGTAACAAGTTGAAGACTATCTTCACATTGTTTCCAAGAAAAATTAGTTTGGCTACACTTCAATGTTTGCATGTGGTTGAAAGTTATGGAATTGAATGCATCATCTCAAGCAATAGTAAGTATGATGGGAAATCAATGATTGAGTTTTTAAATTTAGTAGAATTGAAGTTGCAAGAACTACCAAACTTGATCGGGTTTTTTGAAAGCAATGTTATTCATGAGAATCGTTCCTCAATAATCCAAATTCATGAATCCAATGATCAATTAATTGAAGACGTCCAATTGCCTAGTTCAAAATCAAGTGTTGATCAAATTATGCCCATTGCTACTCTTTTCAGATCTAACTGGATGCAACTGTTTCCAAAGTTGGAAAAACTCTTCTTACATGCATGTTCTTCACTAGATATGGTGTTTGATATGCAAAGATCACAATTTCATGGTGAATCACTGGTGTTCTTATTTGCTCAGTTGAAAGAAATAGAGATATCTTGGCTCACTAAGTTAAGACACATTTGGGGTAATGCTCCAAGCTATATTCAAGGCTTTCAGAATATGAAATCAATCAAAGTTAAGAAATGTGATTCCTTAGGGTTTCTTTTAACTCCCAACATTGCAAGGGCACTTACTCAACTTCAAAAAATGGTGATACATAGCTGCCAATCCATGGAGAAAATTGTTGCAAAAGAAGTAAACCTAAATGGTGATGATGAAGAGAAAAATGTTGAAACCCTAGTGTTTGGTCAATTAGAATCTTTAACACTTGTTGATCTCCCAAATCTTATGAGTATTTGTCCAGATTCCTGTGAAATCATGTGGCCATCTTTGAGATTTTTATGCATTGATGGATGCCCTCAGCTTATTATGACATCTTCCATGGCAAGGCAAGAGAATTTCAATGCCTCATCAAGTTGTTCAACATGTGATGCTGCAAATGGAACTTCTAAAGAGGATTCACCAAGGTTTTCTCATTGTTTCCTTGGATGCACCCCACATGTATTTTCCAACTTCAAGTTTAAGGCTTCATCAACAGAGAAAGATGTCCCTTCTGTCAGCAATATATATTCCAAAGCAGAAACAGTATCCCCCATTCCAGTTTTGGAACAAATGCAAGTAAAAGGATGGGATTCACTACAAGTCTTGTTCCTTCTCAAACAAAACCAACTTTCTGATGACACTAATGCCAATTGTCTAGTGAAGTTGACACTTGCACAAACACCTAAAAATCCAGCAGAAATCACTGCATTCAACAACCTCACTGTGTTAACTATAGATACTTGTCACAAGTTGAGATATCTGTTCTCATATTCCATAGCAAAGCTCCTTGTGAAATTGCAAGAAATAAAAATGTCAAACTGTAAGGTGGTAAAGCAACTCGTCCAAAGAGAAGGAGAAGATAGCTTAACTCTATCTCTTCCTCAATCAAGTTCTCTCAAAGTACAGGAAAAATCCTCATCTAGTGACTGTGCCACCTCTTCCCAAGAGGCATGTGCCTTAGAGTGGTCATCTTTGAAGAGAATTAGCATATCTCACTGTGGGGTGCTGGAAGTTGTTATTGGTGAAATAGGGGAGAAAATAGACACCATAGTTGCTTCATTTGCTCAGCTGCAATCTCTTACATTGAGCCATCTACCAAATGCTGTAAGCTTTTGTCTCACACCTTGTGCATCAGAATCACCATTTGAGAACATCCATGAGGCAACAAGTAATGAAGAAATCAGAATTATGAGAGTTGAACCACTTATAAATGGCTTCATTTTTCCTAATCTAACATATCTAGCAATTTCTAGCTGCAACAAAGTTAGCTGTTTGTTCTCTCCTTCAACATCAACTAGCTTTGTGCGGTTGGTAGAGCTAGATATATCTGGCTGTAGGGAGATAGAGGAAATAGTGTCTACAGAAGAAACACAAGGGAATGTGACTAAGATTGTGTTCCACAGCTTGCAACGTCTAAAACTTGAAAACCTACCAAAACTCAAGGCCTTCTGCCAGGGTTCCTATGGCTTTGATTTTCCATCATTGCATGAAGTATTGGTGAAAAATTGCCACATGATGGAGACATTCTCTCATGAGCCTTCATACAGTCCAAAGTTGGAAGGAGTCATCATGGAAATTGGAAGCATAACCAAGAACATGTGGATGGGAGATCTGAATGCTACTGTACCACTTTGCAAAGGACTTTTGGCTTTTCAAACATCAGAGACACTTGAATGGATCAAGCAGGATAAATGCATACAAAGATACTTCACCGAAGAAAAACACTTGACAGTTGAAGGTTTTCAAAGGCTGCTAAAACTAGTTCCCTCTAATGTGGTACACATATTTCAAAATCTAAAGGAACTCACCATAAAAAATTGTGGTTCACTGGTTGAGGTCTTTGAATCACATGGTGTGGATGCAAAGGAAATGCATGCCATGATACAGTACAAGCTAGAAGCATTGAATTTGTATTTTCTACCAAAACTGATCCACCTATGGAAAAACTATGGTGGAGTTGTGGCATTCCAGAAGCTTAGAATACTGAAAGTACACCACTGTGGCAACTTGTGTAGTTTGTTCTCTCCATCAATAGCCAGAAGTCTAGTGCAACTTAGGCACCTACGAGTTCATAGTTGCCACATGATGGAGGAAATAATTACTAAAGAAGATGAGGAATCAGAAGGATCAAATAATGCTGAGATTGTATTTCCACTTTTGAACAAGCTGGAGTTTCGTTATGTTCCCAACCTCAAATGTTTCTGCTCAGGAACTTTCAATATTGATCTTCCATCTTGTGAAGAAATGATAATTGAAAAATGTCCCAATATGACTACCTTTTGCTATGGATCAGTAACCACAGCAAAGCTTCCCCATATATATAAAGGTTCATATGAGTATATTGACATAATGGGAGACCTTAATATGACCATCCATCATGCTAATGAGAGTTTGAAGGTTGCACTAGAAACATCCGAGACAATCACATGCATTGAGCATGGTCAAAAGCTGCTGTCTTACATAAGAAGTGATACAGAGTTGGTCGTTGAAGGTAGTGAAAAACTGTTGCATTGTATTCCATCCAACATGCTGCATAGGTTCCAGCATCTAAAACAACTCAAGGTACATGATTGTGGTTCACTAGTTGAGATATTTGAATCGGGGGGAGTGGATGAAAATGAAGATGAAGGGTGGACCAGAACACCGTACAATTTTGATCTACAGGAACTGCATCTGTATGATCTTCCTAAACTGATGCACATATGGAAATATCATGGTGAAATCCTGAGCTTTATGAACCTTAAAAAGCTAAAGATTCAGCACTGTCCTAATTTGAAAAATGTGCTTTCTCCTTCCATGGCCAGAAGCCTTTCACAACTCCAAGAGCTTTCAGTATATGAATGTGAGTTGATAGAAGAGATCATCACTAGAGATGAGAAACCATCTGAAGAACCAAGCAAGGTGAAGATTATATTCCCGGCATTGCAATGGTTAACCCTTTACCGGCTTCCAAGCCTTAGATGTTTCTGTTCAAGCACTTACCACTTTGAGCTGCCATCCTGCCATGACATAACCATTACAGAATGTCCTAAGATGGAGGCTTGCCATGGAAACAGAGGCACCTTAGAACTTCCTTTTGTCTCCATTAAGACAAATAATTTCAGGGCAGAAGAGAGATCTAAATAA 5271 0.3629 MGSQKNFTISVLSPDESWDLFHDMVDKNISTKLDIYHIAKEVANECGGLPIAIVTMAKALANKEKHIWEDALDQLKNSSINSLLGMQAYVYSSIKLSYNFLDNEEDKKILFLCCLFPEDFDIPIEILLRHGMGLRFFKGIDALWKVRNRVHTIVDKLKRRFMLLDGNVEECVKMHDIVRDVIRSIASTEEYGFVVHVSLILEEAKEYPKMLNCQKLNLLQITSKKMDLVPENYLQCVNKLMVLNLQNLCIHSMSFAFQALDNIHTLLLEDCHVGDISIIGKQLKKLEILSFSNSNIKQLPEEIGQLRSLRLLDLTECNYLIQISTNVLANLSRLEELYLRVRNLPSKENNHILFELLSLSHHLKVVEIAILTNEDLPKDLFFENIERFWVYLGDSSTFFNGIVRKGYLHPNILKLNNSYYKYVKESVTIQQLLQKVEILNLVDIKNMKNVILELNERGFPFLKHLSIEFCNNLEYVVDAFDGCIFPQLLSFSLRSLDNLKEIFNVISHMSQANDFTKANSITSSQCFGSLTKLKIEYCNKLKTIFTLFPRKISLATLQCLHVVESYGIECIISSNSKYDGKSMIEFLNLVELKLQELPNLIGFFESNVIHENRSSIIQIHESNDQLIEDVQLPSSKSSVDQIMPIATLFRSNWMQLFPKLEKLFLHACSSLDMVFDMQRSQFHGESLVFLFAQLKEIEISWLTKLRHIWGNAPSYIQGFQNMKSIKVKKCDSLGFLLTPNIARALTQLQKMVIHSCQSMEKIVAKEVNLNGDDEEKNVETLVFGQLESLTLVDLPNLMSICPDSCEIMWPSLRFLCIDGCPQLIMTSSMARQENFNASSSCSTCDAANGTSKEDSPRFSHCFLGCTPHVFSNFKFKASSTEKDVPSVSNIYSKAETVSPIPVLEQMQVKGWDSLQVLFLLKQNQLSDDTNANCLVKLTLAQTPKNPAEITAFNNLTVLTIDTCHKLRYLFSYSIAKLLVKLQEIKMSNCKVVKQLVQREGEDSLTLSLPQSSSLKVQEKSSSSDCATSSQEACALEWSSLKRISISHCGVLEVVIGEIGEKIDTIVASFAQLQSLTLSHLPNAVSFCLTPCASESPFENIHEATSNEEIRIMRVEPLINGFIFPNLTYLAISSCNKVSCLFSPSTSTSFVRLVELDISGCREIEEIVSTEETQGNVTKIVFHSLQRLKLENLPKLKAFCQGSYGFDFPSLHEVLVKNCHMMETFSHEPSYSPKLEGVIMEIGSITKNMWMGDLNATVPLCKGLLAFQTSETLEWIKQDKCIQRYFTEEKHLTVEGFQRLLKLVPSNVVHIFQNLKELTIKNCGSLVEVFESHGVDAKEMHAMIQYKLEALNLYFLPKLIHLWKNYGGVVAFQKLRILKVHHCGNLCSLFSPSIARSLVQLRHLRVHSCHMMEEIITKEDEESEGSNNAEIVFPLLNKLEFRYVPNLKCFCSGTFNIDLPSCEEMIIEKCPNMTTFCYGSVTTAKLPHIYKGSYEYIDIMGDLNMTIHHANESLKVALETSETITCIEHGQKLLSYIRSDTELVVEGSEKLLHCIPSNMLHRFQHLKQLKVHDCGSLVEIFESGGVDENEDEGWTRTPYNFDLQELHLYDLPKLMHIWKYHGEILSFMNLKKLKIQHCPNLKNVLSPSMARSLSQLQELSVYECELIEEIITRDEKPSEEPSKVKIIFPALQWLTLYRLPSLRCFCSSTYHFELPSCHDITITECPKMEACHGNRGTLELPFVSIKTNNFRAEERSK* 1757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0520 1756 SUPERFAMILY RNI-like 913 1219 - -
Pvu4g0520 1756 SUPERFAMILY RNI-like 429 821 - -
Pvu4g0520 1756 SUPERFAMILY RNI-like 1123 1720 - -
Pvu4g0520 1756 Gene3D - 11 93 IPR042197 -
Pvu4g0520 1756 Pfam NB-ARC domain 4 99 IPR002182 GO:0043531
Pvu4g0520 1756 Gene3D Ribonuclease Inhibitor 202 610 IPR032675 -
Pvu4g0520 1756 PANTHER - 1369 1489 - -
Pvu4g0520 1756 PANTHER - 513 607 - -
Pvu4g0520 1756 PANTHER - 950 1088 - -
Pvu4g0520 1756 PANTHER - 701 828 - -
Pvu4g0520 1756 PANTHER - 1122 1256 - -
Pvu4g0520 1756 PANTHER - 1 486 - -
Pvu4g0520 1756 PANTHER - 1625 1729 - -
Pvu4g0520 1756 Gene3D - 94 185 IPR036388 -
Pvu4g0520 1756 Gene3D Ribonuclease Inhibitor 1036 1240 IPR032675 -
Pvu4g0520 1756 Gene3D Ribonuclease Inhibitor 1547 1739 IPR032675 -
Pvu4g0520 1756 Gene3D Ribonuclease Inhibitor 1283 1487 IPR032675 -
Pvu4g0520 1756 Gene3D Ribonuclease Inhibitor 650 839 IPR032675 -
Pvu4g0520 1756 Coils Coil 58 78 - -
Pvu4g0520 1756 PRINTS Disease resistance protein signature 46 60 - -
Pvu4g0520 1756 PRINTS Disease resistance protein signature 304 320 - -
Pvu4g0520 1756 PANTHER RPP4C3 701 828 - -
Pvu4g0520 1756 PANTHER RPP4C3 1 486 - -
Pvu4g0520 1756 PANTHER RPP4C3 1625 1729 - -
Pvu4g0520 1756 PANTHER RPP4C3 513 607 - -
Pvu4g0520 1756 PANTHER RPP4C3 1122 1256 - -
Pvu4g0520 1756 PANTHER RPP4C3 1369 1489 - -
Pvu4g0520 1756 PANTHER RPP4C3 950 1088 - -
Pvu4g0520 1756 SUPERFAMILY L domain-like 171 505 - -
Pvu4g0520 1756 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 113 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0520 Pvu-Chr4 5575022 5588487 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0520 - - pvu:PHAVU_004G0480000 3499.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g0520 4 5575022 5588487 Pvu4g0520 4 5575022 5588487 ECH