Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0518 ATGTCCCATACCATGAAGCAGTGTCTACACCTTAGAAATGCTCATGTACTTGGTGTGATCTCTTTGATTATAATATTGGGATCACTAAATGTGAAGGTAGCAGAGTCTAGGGTTTATAGTTCATTGGCCAACATTGAATATCCTGCAATCAATTGCAGAAAGCACAGTGCAAGTTTGACAGATTTTGGTGGAGTTGGTGATGGGAAAACATCCAACACAAAGGCCTTTCAATCTGCCATAACCAAACTCAGCCAACATGCTTCTGATGGAGGTGCAACCCTTATTGTGCCACCTGGGAAATGGCTAACAGGACCCTTCAATCTCACCAGCCATTTCACTCTTTTTCTTCAAAAGGGTGCTGTTATTCTTGCTTCTCAGAATGAATTAGAATGGCCTCATCTTGCTATACTACCTTCTTATGGAAGAGGAAGAGATGCTCCTGGTGGAAGGTTTAGCAGTCTAATTTTTGGGACTAATCTCACTGATGTTGTAATTACTGGTCAAAATGGTACAATTGATGGACAAGGATCTTATTGGTGGGACAAGTTCCACAAGAAACAATTGACTCTCACTAGGCCCTACATGATTGAGATCATGTACTCAGATCAAATCCAAATATCAAATCTCACTTTGGTCAATTCCCCAACTTGGTTTGTCCATCCAATTTACAGCAGTAACATAATTGTAAGTGGCCTTACCATTCTTGCCCCAGTAGACTCTCCTAATACTGATGGTGTAAACCCAGATTCATGTACAAACATTAGGATTGAAGACTGCTTCATTGTTTCTGGGGATGATTGCATTGCAGTAAAAAGTGGTTGGGATGAGTATGGAATTAAATTTGGAAGGCCAACCCAACACTTAGTGATTAGAAGGGTGACTTGCATCTCCCCAGACAGTGCCATGGTTGCATTAGGCAGTGAAATGTCTGGTGGAATTGAAGATGTTAGGGTTGATGATCTCACTGCTATCAACACTGAATCAGCTATTAGAATCAAAACAGCAGTTGGTAGAGGTGGATTTGTGAAGAACATATTTGTTAGAGGATTGAATCTGAACACCATGAAATATGTGTTTTGGATGACTGGCTCTTATGGAGAACACCCTGACCCTAACTTTGATCCCAAAGCACTTCCTACTATTACTGGAATAAATTATAAAGATATTGTTGCCAAGAACGTTACGTATTCTGCAAAACTTGAAGGAATCTCAAATGACCCTTTCACTGGAATCTGCATTTCTAATGTGTCAGTCCAAGTGAGTGCACAACAAAAGAAGCTTCAGTGGAATTGCACTAATGTTGCTGGAGTTACCAATAATGTCACTCCTACCCCTTGTGCATTGCTGCCACAAAAAGAGAAAACTGATTGTGCTTTTCCAACTGACAAACTACCCATTGAAAATGTTCAATTCAAGACATGTTCCTTATGA 1431 0.4025 MSHTMKQCLHLRNAHVLGVISLIIILGSLNVKVAESRVYSSLANIEYPAINCRKHSASLTDFGGVGDGKTSNTKAFQSAITKLSQHASDGGATLIVPPGKWLTGPFNLTSHFTLFLQKGAVILASQNELEWPHLAILPSYGRGRDAPGGRFSSLIFGTNLTDVVITGQNGTIDGQGSYWWDKFHKKQLTLTRPYMIEIMYSDQIQISNLTLVNSPTWFVHPIYSSNIIVSGLTILAPVDSPNTDGVNPDSCTNIRIEDCFIVSGDDCIAVKSGWDEYGIKFGRPTQHLVIRRVTCISPDSAMVALGSEMSGGIEDVRVDDLTAINTESAIRIKTAVGRGGFVKNIFVRGLNLNTMKYVFWMTGSYGEHPDPNFDPKALPTITGINYKDIVAKNVTYSAKLEGISNDPFTGICISNVSVQVSAQQKKLQWNCTNVAGVTNNVTPTPCALLPQKEKTDCAFPTDKLPIENVQFKTCSL* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0518 476 Pfam Glycosyl hydrolases family 28 153 435 IPR000743 GO:0004650|GO:0005975
Pvu4g0518 476 PANTHER PECTIN LYASE-RELATED 20 475 - -
Pvu4g0518 476 Gene3D - 32 444 IPR012334 -
Pvu4g0518 476 Pfam Pectate lyase superfamily protein 59 118 IPR024535 -
Pvu4g0518 476 PANTHER ENDO-POLYGALACTURONASE-LIKE PROTEIN 20 475 - -
Pvu4g0518 476 SUPERFAMILY Pectin lyase-like 50 462 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0518 Pvu-Chr4 5522103 5525161 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0518 22 476 Glycoside Hydrolase AT3G48950 68.182 0.0 672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0518 - - gmx:100779166 822.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g0518 4 5522103 5525161 Pvu4g0518 4 5522103 5525161 ECH