Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0517 ATGTCTCGTACCATGAAGCAGTGTCTACACCTTGGAAATACCAATGTACTTGGTGTGATCTCTTTAATTATAACATTGGGATCACTAAATGTGAAAGTAGCAGAATGTAGGGCCATTGGATTGGGCAACAGTGAATATTCTGCAATCAATTGTCGAAAGCACAGTGCAACTTTGACAGATTTTGGTGGAGTTGGTGATGGGAAAACATCCAACACAAAGATCTTTGCAACTGCCATAGCCAACCTCACCCAACATGCTTCTGATGGAGGTGCAACTCTTATTGTGCCATCTGGGAAATGGCTAACTGGACCCTTTAATCTCACCAGCCATTTCACTCTTTTTCTTCAAAAGGATGCTGTTATTCTTGCTTCCCAGGATGAAAAAGAATGGCCTAGTGTTGCTCTACTACCTTCTTATGGAAAAGGAAGAGATGCTCCTGATGGAAGGTTTAGCAGTCTAATTTTTGGTTATAATCTCACTGATGTTGTAATTACTGGTCAAAATGGTACACTTGATGGACAAGGATCTTACTGGTGGGTCAAGTTCAAAAAGAAGGAATTTACTCTCACTAGGCCCTACATGATTGAGATCATGTTCTCAGATCAAATCCAAATATCAAATATCACTTTGATCAATTCCCCAAGTTGGTTTGTCCATCCAATTTACAGCAGTAACATAATTGTAAGTGGCCTTACCATTCTTGCCCCAATAGACTCTCCTAATACAGATGGCGTAAACCCAGATTCATGTACAAACACTAGGATTGAAGACTGCTACATTGTTTCTGGTGATGATTGCATTTCACCAAAAAGTGGTTGGGATAATTATGGAGTTAAATTTGGAAAGCCAACAAAAAACATAATCATTAGAAGGATCACTTGTATATCCCCAGACAGTGCCATGGTTGCATTAGGCAGTGAAATGTCTGGTGGAATTGAAGATATTAGGGTTGAAGATCTCACTGCCATTGACACTCAATCAGCTGTTAGAATCAAAACAGCAGTTGGTAGAGGTGCATATGTGAAGAACATATATGTTAGAAATTTGAATCTGAACACCATGAAATATGTGTTTTGGATGACTGGCTCTTATGGATCACACCCTGACCCTGAATTTGATCCCAAAGCACTTCCTGTTATTTCTGGAATAAATTATAAAGATATTGTTGCCAAGAACGTTACATATGCTGCAAGACTTGAAGGAATCCCTAATGACCCTTTCACTGGAATCTGCATTTCTAATGTCACAATGGAACTGAGTAAAGAACAACACAAGCTTCAATGGAATTGCACTGATATTTCTGGAGTTTCCAATAATGTCACTCCTACCCCTTGTGAAGAGCTGCAACAAAAAGTTTTTATGAACTAA 1368 0.3904 MSRTMKQCLHLGNTNVLGVISLIITLGSLNVKVAECRAIGLGNSEYSAINCRKHSATLTDFGGVGDGKTSNTKIFATAIANLTQHASDGGATLIVPSGKWLTGPFNLTSHFTLFLQKDAVILASQDEKEWPSVALLPSYGKGRDAPDGRFSSLIFGYNLTDVVITGQNGTLDGQGSYWWVKFKKKEFTLTRPYMIEIMFSDQIQISNITLINSPSWFVHPIYSSNIIVSGLTILAPIDSPNTDGVNPDSCTNTRIEDCYIVSGDDCISPKSGWDNYGVKFGKPTKNIIIRRITCISPDSAMVALGSEMSGGIEDIRVEDLTAIDTQSAVRIKTAVGRGAYVKNIYVRNLNLNTMKYVFWMTGSYGSHPDPEFDPKALPVISGINYKDIVAKNVTYAARLEGIPNDPFTGICISNVTMELSKEQHKLQWNCTDISGVSNNVTPTPCEELQQKVFMN* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0517 455 Pfam Glycosyl hydrolases family 28 151 432 IPR000743 GO:0004650|GO:0005975
Pvu4g0517 455 Gene3D - 42 446 IPR012334 -
Pvu4g0517 455 PANTHER ENDO-POLYGALACTURONASE-LIKE PROTEIN 21 452 - -
Pvu4g0517 455 PANTHER PECTIN LYASE-RELATED 21 452 - -
Pvu4g0517 455 SUPERFAMILY Pectin lyase-like 50 448 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0517 Pvu-Chr4 5510211 5513153 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0517 45 451 Glycoside Hydrolase AT3G48950 69.853 0.0 619
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0517 - - gmx:100779166 727.243
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g0517 4 5510211 5513153 Pvu4g0517 4 5510211 5513153 ECH
Pvu4g0517 4 5510211 5513153 Pvu1g1185 1 31986390 31991097 PCT