Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0488 ATGTTTAGTAGCAGACTCTATCAGTTTTGTGTGGCCACCATTTTATGCATCTTTTTATCTCATGCAAGTTTCCATGCAGAGATGTGTGCGGAGACAGAGAAGCAAGCTCTTCTCAAGTTGAAGGAAGGTTTTGTTCATCAAACGGAGCTTCTATCCTCCTGGAACGGTGATGATTGTTGCAAATGGAAAGGAGTTTCATGCAATAATTTAACAGGTCATGTAACCTCACTTCATCTCACATTTTCAAATTTTACAAAACATCTCAGTTTCTTAGATCTCAGTCATAATGACTTAGTGGGAGAGATCCCAAAATGCATTGGTTCACTTGGTCAATTGACACATCTAAAACTTGCATGGAATGGTCTTAATTCCGTTTCAGATGCTTTGTCAAATCTTTCTAATTTGCAATATCTTGACCTTAGGAAAAATGATTTTGTTGCAAGTGACCTTAATTGGCTTTCTCACCTTTCTACTTTGAGATACCTTGATCTTTCAAATAACAATCTTGGTGCAGTTATTGATTGGCCATCATCAATAAGTAAAATCCCTTTTCTATCTGAACTCTATTTAAATGACTGTGGACTCCCTCAAGTCAATCCTAAATCAATCTCCCACGTCAATTCTTCCACTTTCCTCCAAATCCTCAGTCTATCAGGAAATAATTTTGACTCTTCAATTCTGTCATGGGTGTTGAATGTTAGCAAAGTCCTCACAGTTCTTGATCTCTCACATAATGAACTTGATGGTGGCATAATAAAGTCCTTTAACTCTTTGTGTCAACTGAAGAAGTTGTACCTGGGTTCCAACAAATTGTCTGATCTACTCAGTGATTACTTACCAGAATTTTGTTCTGCAAAAGATTTAGAGGTGTTGAATCTCGACCACAACCCATTTGGTAATGGGTCGCTTCCTGATTTTTCAATGTTTTCATCCTTGGAAAGACTATCACTTGAAAATACCAGTATTGTTGGGCCATTATCATTTGGTCACTTGCCTCGTCTTAAAGCTTTGGATCTTAGTTTAAACAATTTGAGTGGATCATTGCCTGTATTCGAGGTTACCAAATTTTCCTCATTGCATTTTTTGGATCTTTCACACAACAAATTGAGTGGGACACTTCCGTATACTATTGGACAACTTTCTAATCTCTGGTTTTTGTCCATCTCCTCAAATGAGTTTAATGGGAACATTAGTGAAGAGCATTTATTGAAACTATCTGGATTGAAGATATTTGATGTGAGTCAAAATTCTCTTTCATTTAACTTGAGTTCAGATTGGGTTCCACCTTTCCAATTGGTGGCATTGTATGCATCATCCTGCATTTTGGGGCCTCAATTTCCAATGTGGCTTAAACAGCAAAGGAAACTTCAGGTGCTGCAAATCTCTAATACCCACATTATGGATGTATTTCCTGAATGGTTTGGGGACATATCATCAAGTTTGTTATACATAAATGTTTCCCATAATAAACTTAGTGGAGTCTTACCAAAATCACTATCAGGTATTAAAACAGGGATTATGTGTACATGGGATTTTAGTTTCAACAATTTGTCTGGCCCATTACCTCCTTTTCCTCCAAAAGTATATAAACTCTTTCTCTCAAATAATATGTTCACGGGGTTTGAATCCTCCTTTTGTGAAACATCCCCACTGTTTGTAACTTATCTTGAACTCTATAGTAACGCACTCACGGGCCCCCTTCCAAATTGTTGGCAGAAATTTCAAAATTTGGAGATTCTGAATTTGGCAAATAACAGTTTATCAGGGACAGTGCCAGAGTCATTTGGCAATTTACAAAGTATTTTGTGGATGCAGCTAAATAGCAATAACTTCTCTGGTGAGATTCCGTCTCTGAGTCTTTGTAAAAGAATAAGATTCATTGATTTTGGGGATAATAATCTTGAAGGAACATTACAAACACTGTTAGAGTTGGATCATTTGGAAGTATTGCTTCTAGGAGGTAACAGGATCCGAGGAAGCATACCCACAAGTCTATGCAATATATTATCTCTTAAATTATTGGATTTCTCATCAAACAATATTACAGGGGAAATACCACAATGCATCGGTGACATAAATGAGATGTCATATGTGGAATTTGGAGTAGATTACACTTTCTTTGGAACGTCTGCACCTTTAATATTTCATGATAGTGGAATTGGGAAATTTTATGATCTTCCAATAATTTTTAAAAGCATTGATATTTCTGATAACCATTTAACAGGAGAGATACCGCAAAGTATAACATCACTAGTGGGTTTAATAGCCTTAAATCTTTCAAGAAATAATCTTACAGGATTCATTCCCGACAGCTTTGGTCGTTTGGTGAACTTGGAATCACTTGACTTGTCAAGAAACCATCTTCATGGTAGAATTCCATCAAGCTTTTCACAATTGCATTTTCTCACGGTCTTGAACTTGTCTTTCAACAACTTAACAGGATTGGTTCCTGTAGGCCCCCAACTAGACACCTTTGATAACTCTTCGTATGTTGAGAACATCGGGCTTTGTGGCTTGCCACTCGAAAACCAATGCCCAGGAGATGTGATTCCACCAAGAGGAAGAGTTGAAAAAAATGAGGATCAAGTCTTAAGCTTTGAGTTTTATCTCAGTCTGGGATTGGGATTTTGTGTTGGATTTTGGAGTGTTTGTGGAACTCTAATGGTAAAAAGTTCATGGAGACGTGCTTATTTTCAGTTGTTCATCACCGTAAGCGATTGGATGTATGCGACAGTTGTTATCTTTACAGCCAGAGTGAAAACAAGATTCCGAATTTAA 2778 0.3711 MFSSRLYQFCVATILCIFLSHASFHAEMCAETEKQALLKLKEGFVHQTELLSSWNGDDCCKWKGVSCNNLTGHVTSLHLTFSNFTKHLSFLDLSHNDLVGEIPKCIGSLGQLTHLKLAWNGLNSVSDALSNLSNLQYLDLRKNDFVASDLNWLSHLSTLRYLDLSNNNLGAVIDWPSSISKIPFLSELYLNDCGLPQVNPKSISHVNSSTFLQILSLSGNNFDSSILSWVLNVSKVLTVLDLSHNELDGGIIKSFNSLCQLKKLYLGSNKLSDLLSDYLPEFCSAKDLEVLNLDHNPFGNGSLPDFSMFSSLERLSLENTSIVGPLSFGHLPRLKALDLSLNNLSGSLPVFEVTKFSSLHFLDLSHNKLSGTLPYTIGQLSNLWFLSISSNEFNGNISEEHLLKLSGLKIFDVSQNSLSFNLSSDWVPPFQLVALYASSCILGPQFPMWLKQQRKLQVLQISNTHIMDVFPEWFGDISSSLLYINVSHNKLSGVLPKSLSGIKTGIMCTWDFSFNNLSGPLPPFPPKVYKLFLSNNMFTGFESSFCETSPLFVTYLELYSNALTGPLPNCWQKFQNLEILNLANNSLSGTVPESFGNLQSILWMQLNSNNFSGEIPSLSLCKRIRFIDFGDNNLEGTLQTLLELDHLEVLLLGGNRIRGSIPTSLCNILSLKLLDFSSNNITGEIPQCIGDINEMSYVEFGVDYTFFGTSAPLIFHDSGIGKFYDLPIIFKSIDISDNHLTGEIPQSITSLVGLIALNLSRNNLTGFIPDSFGRLVNLESLDLSRNHLHGRIPSSFSQLHFLTVLNLSFNNLTGLVPVGPQLDTFDNSSYVENIGLCGLPLENQCPGDVIPPRGRVEKNEDQVLSFEFYLSLGLGFCVGFWSVCGTLMVKSSWRRAYFQLFITVSDWMYATVVIFTARVKTRFRI* 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0488 925 Pfam Leucine rich repeat 731 788 IPR001611 GO:0005515
Pvu4g0488 925 Pfam Leucine rich repeat 454 502 IPR001611 GO:0005515
Pvu4g0488 925 Gene3D Ribonuclease Inhibitor 507 848 IPR032675 -
Pvu4g0488 925 PANTHER UNNAMED PRODUCT 11 540 - -
Pvu4g0488 925 PANTHER UNNAMED PRODUCT 177 696 - -
Pvu4g0488 925 PANTHER UNNAMED PRODUCT 553 882 - -
Pvu4g0488 925 SUPERFAMILY L domain-like 510 842 - -
Pvu4g0488 925 SMART LRR_typ_2 775 798 IPR003591 -
Pvu4g0488 925 SMART LRR_typ_2 331 353 IPR003591 -
Pvu4g0488 925 SMART LRR_typ_2 258 280 IPR003591 -
Pvu4g0488 925 SMART LRR_typ_2 751 774 IPR003591 -
Pvu4g0488 925 SMART LRR_typ_2 132 155 IPR003591 -
Pvu4g0488 925 SMART LRR_typ_2 644 668 IPR003591 -
Pvu4g0488 925 SMART LRR_typ_2 356 380 IPR003591 -
Pvu4g0488 925 SMART LRR_typ_2 574 597 IPR003591 -
Pvu4g0488 925 SMART LRR_typ_2 109 131 IPR003591 -
Pvu4g0488 925 SMART LRR_typ_2 799 822 IPR003591 -
Pvu4g0488 925 SMART LRR_typ_2 156 178 IPR003591 -
Pvu4g0488 925 Gene3D Ribonuclease Inhibitor 174 278 IPR032675 -
Pvu4g0488 925 Gene3D Ribonuclease Inhibitor 279 496 IPR032675 -
Pvu4g0488 925 PRINTS Leucine-rich repeat signature 359 372 - -
Pvu4g0488 925 PRINTS Leucine-rich repeat signature 775 788 - -
Pvu4g0488 925 Pfam Leucine rich repeat N-terminal domain 31 68 IPR013210 -
Pvu4g0488 925 SUPERFAMILY L domain-like 28 319 - -
Pvu4g0488 925 Pfam Leucine Rich Repeat 576 598 IPR001611 GO:0005515
Pvu4g0488 925 SUPERFAMILY L domain-like 279 539 - -
Pvu4g0488 925 Gene3D Ribonuclease Inhibitor 29 173 IPR032675 -
Pvu4g0488 925 Pfam Leucine Rich repeat 236 253 IPR001611 GO:0005515
Pvu4g0488 925 Pfam Leucine Rich repeat 155 171 IPR001611 GO:0005515
Pvu4g0488 925 Pfam Leucine Rich repeat 800 814 IPR001611 GO:0005515
Pvu4g0488 925 SMART LRR_sd22_2 644 670 - -
Pvu4g0488 925 SMART LRR_sd22_2 775 801 - -
Pvu4g0488 925 SMART LRR_sd22_2 109 134 - -
Pvu4g0488 925 SMART LRR_sd22_2 574 600 - -
Pvu4g0488 925 SMART LRR_sd22_2 258 281 - -
Pvu4g0488 925 SMART LRR_sd22_2 156 184 - -
Pvu4g0488 925 SMART LRR_sd22_2 405 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0488 Pvu-Chr4 5060926 5064468 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0488 6 847 Receptor kinase-like Gene Family AT4G13920 31.201 1.96e-85 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0488 - - vun:114181765 1436.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g0488 4 5060926 5064468 Pvu4g0488 4 5060926 5064468 ECH