Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0142 ATGGGCGCCGATGAAAGCGACAGCATGGCACAAGGATCATCTCCTATGCCAGAAAGCGAGAGCGTGGTTCGAGGTTCGGAGCAGGGGAAGGAGCTTAGGGAAGTTGTTGGGGGTTTGGGAAGTGAGGAGGGGTGTGGTGGGGTTGCTGTTAATGAGGATGGGTTTTCTGGCATTGAAAACCGAGGTTTGGGTGATGACGGGGTTGTTAATAACAGTAATGTCTTGGAGGCCAAGGTTTCAGTTGTGAGTGGAAATGATTGTCAAGTTTTGACTGATTCTGAGGTGAATGGGATGTCCTCTTGGTTAGGAATGCAAGAAAGTGATATGAGCACGGTGTTTTCTAGTGATGGAGCTGAAAAGCTAGACTATGATTATGCATCTGAGAAGATGGACTATATGTTTGCTTCTGAGATGGAAGAGGCTGCTGTTTTGAGTTTGGATGGATCGGTAGGGGATGGTGGAGAACATGGTAGTGATGGAGGCAGGAGCAGCGAGGAAGAAAAATATGAAGATTGTGTTGCCGATAATGTCACTGTTGCTTCGGAGAGTAAAGTAGCAGAAGTTGCTGTTTTGAGTTTGGATGGATCGGTAGGGGATGGTGGAGAACATGGAAGTGATGGAGACAGGAGCAGCGAGGAAGAAAAATATGAAGATTGTGATGCCGATAATGTCACTATTGCTTCGGAGAGTAAAGTAGCAGAAGTTTCTGTTTTGAATGGGGATAGTTTGGTAGGGGTTGGTTCTGAACACACAATAGATGGGAAGGAAAGAGAAGACTGTGATGGTTATGACAGAAGAGAAGAGGATATGAGGGAAGAGGAAGATAAAGATCCTGATGGGCACATTGTGGTTGGGGTTGATGGGCAAGGCAGAAGTGAAGAGGGAGGTAAAGATGAAGACTGTGATGGAAATGATGTGACTATTACTTCTGACAGTAGGCCAGCTGAAGCTTCTGTTTTGATTGCGGATAGGTCGGTAGGAGTTGGCAAGGAAGATGGAAGAGAAGAAGATATCAATGAAGAGGAAGTTGGAGATGAAAACTGTGATGGGAATGTTGTGACCATTACTTCTGCGAGTAGGATAGCAGAAGCTGCTGTTTCGAGCGTGGATACTCTTGGCAGGGAAGAAAGAAGAGAAGAGGATATCAGTGAGGAGGAAGGTGGAGGGGAAGACCGTGATGGGAATGTTGTGACTATTACTTCTGACAGTAGAGTAGCAGAAACTGCTGTTTTGAGTCTGGATAGTTTTGCAGGAATTGGAGGGCAAGACAGAAAAGAAGAGGGTATACACCAAGAGGAAGGCAAGGATGAAGAGTGTGATGCAGACATTGTTGCTGTTGCTTCTGAGAGTAAAGTTGCAGAAGCCGCTGCTTTGGGTGTGGATAGTTTGATAAATGTTGGTGGGGAAGATACAGCAGGTGAAGACTGTGATGGGAACATTGTGACTCTTGCTTCTCAGAGTAAAGTTGCGGAAGCTACTGATTTTGGTGTGGATAGTTTAGTAGGTCCTGGTGCGTATGACAAAATAGCGGAGGAGGAATGTGAATACAGAGGAAAGAACGAAGAATGTGGTGGGAACATTGTGACTATTACTTCTGAGAATAGACTAGCAGATGCGTCTGTTTTGAGTGTGGATGGTTCAGAAGTGGTTGGTGTTGAGGAAACAAAAGATGGGGGAGGAAGTGAAGAGGTAGAAAAAGACAAAGATTGTTCTGGCAACATTGTGACTATAGAAGTTCCAAGTGCAGAGACAAGTGAGAAGATGGATGTGGAAGTGGAGGACTTGAGTGATGAAGGGTATGGTTTCTCTGTTGGTGATTTTGTTTGGGGTCAAGGCGAGAGTCAACTTTGGTGGCCCGGCCGGATTTATGACCCATCTGATGCATCTGACGTTGCATTGAAGCTGAAACAAAAGAACAGACTTCTGGTTGCCTACTTTGGGCATGGAGCCTTTGCGTGGTGTCATCCATCGCAGTTAAAGTCTTTTGAGGATAACTTTGATGATATGCTTAAACAGAGTAGCTGCATTGATTTTGTCAATGCTGTGCAAGATGCTGCAAGAGAGGTCGGAAGGCTTCTGTCTATGAAGCTGAGTCGTTTAGTTCTTGACAAGAAAACAGGTTCTGAATCTACTCTCCTGTTGGGGAAAAATTCTGGAATCAAGGAAGGAGTTCTTGTGCCAGAAACTGGCATAGAGAGACTTTTATACAGTCAATTTGAGCCAGTAGAATTACTTTCTCATATGAATCAAATTGCGCGAATTGTTGATAGTGGTAGTAGTATTATGGAGCTGGAGATCTTAAAGGCTCGACTTGCGGCATATTATCTGTCAAAAGGGCATAAATTACCTAATTTTATGGATACCCAGTTGGCTCCTGGAGGTGAAGATAGTCTAACGGATGAAACAGTTGCTGTAGAGAACAGTAGAAGTACTGTGGAAGCCCCGACCCAAGGACCATTTGATGAACTGGGTCATTCTCCAGGGCTCCCAGGGAACATATCAAACCATGTTAGAAAGCAGAAAAGCATTGCTGAAATTATGAGGGAGGACAAAGATGTTCATACAGCAAGTAGGGAGGTGGAGGCAACTGGCTCAAATGGTAGAAGGAAGAGAAAAGGTAGTGAGGCTGGTGTGAGATCTAAACCTGTTCAAAAGAAAAAAGAGTTGCTTCTGGACACTGATGAAGATGTGTCAAGTGCTGAACATTGTGCCGAGGAAAACAGTGGCAGCATTGGCTCATGGTTGCAGTCAAAGGAGAAGAAAGAAGTTTTGGATGAAGGGAGGAAGGGTAGTTTGTCTAGAGAAAGGAAGAAAAGTAAGTACTTGTCCCCTCCTTTCACTACTCCAATCAGGGGACAAAGGGAGGAAAGTATTGAAGCAGAATCCCTTGAAGTATCCAGAAAAGTTAAAGCATCACATACAAGCTCAGTGGCTGCTGTTCTGCAATATCCTCCAGTTTATATGGGTAGGCTTTTTGATAGCTCAAATTACCAAACCGAGGAAGATGATGGGAAAAAGGTTATTGATCCAAAGAAAATCCAGGCTCCTGTGGAGGAAGTTCTGTTCCAAGTCCTTAATGCAGCTATTAGTCCACAAATTCGCAGGGAAGGCACTTCCCTTGATCAATTTGTTGACTTCACTTTTGCCTTTAGAAGTTCATTATATTCTGAAGGATCGTTACGCGATCTATACGAGAAGAATCAGCCTGGAAGGAAAAGAAAGAGGCCAGAATCTGAGGAAGAAGATGGAATGTTGAAAGATGCTCAAATATCATCACAGAAACAAAATTCTGGGTCAAAGAAGAAAAGAAAGGAAACTGCTTCAGGTAAGAAGGGGGGTGATGAAAATGCTCAAGGTGCGGTTCTTGTTGTTTCATTTTGGCAAGGAACATCCACGCCTTCAAGATCTGAGCTTATCTCAGTGTATAGTAAGTTTGGAGCTCTGAATGAAGCAGAAACAGATGTGTTCAACAATAACTACACAGCTAGAGTGTCCTTCCTGAGAACTTCTGATGCTGAAAATGCATTGAACCATTCTAAAAACAATAACCCTTTTGGATCTGCTGATGCCACTTTTCAGCTCCAGTATCACTCTGAGGGATCAAAGTCTGAAGAGCATGGTGAAAGATCAAAGAACAAACCTTTGGTAGCAGCTACATCACCATCGGTTTCAGTCTCACAGGGTGGTGAAGCATCAAGATTGATCTTTATCCAGAAGAAGCTTCAAGGTCTGACTTTGATACTTGAAGCATCAGGTGACAAATCTCCCGATTTGATGGCTGAACTGCAGAGGGAGGTGAAGGCTCTTCTGGAGGATGTCAACCAAATGGTTGAAGCTTCTCTGTTTTAG 3849 0.4401 MGADESDSMAQGSSPMPESESVVRGSEQGKELREVVGGLGSEEGCGGVAVNEDGFSGIENRGLGDDGVVNNSNVLEAKVSVVSGNDCQVLTDSEVNGMSSWLGMQESDMSTVFSSDGAEKLDYDYASEKMDYMFASEMEEAAVLSLDGSVGDGGEHGSDGGRSSEEEKYEDCVADNVTVASESKVAEVAVLSLDGSVGDGGEHGSDGDRSSEEEKYEDCDADNVTIASESKVAEVSVLNGDSLVGVGSEHTIDGKEREDCDGYDRREEDMREEEDKDPDGHIVVGVDGQGRSEEGGKDEDCDGNDVTITSDSRPAEASVLIADRSVGVGKEDGREEDINEEEVGDENCDGNVVTITSASRIAEAAVSSVDTLGREERREEDISEEEGGGEDRDGNVVTITSDSRVAETAVLSLDSFAGIGGQDRKEEGIHQEEGKDEECDADIVAVASESKVAEAAALGVDSLINVGGEDTAGEDCDGNIVTLASQSKVAEATDFGVDSLVGPGAYDKIAEEECEYRGKNEECGGNIVTITSENRLADASVLSVDGSEVVGVEETKDGGGSEEVEKDKDCSGNIVTIEVPSAETSEKMDVEVEDLSDEGYGFSVGDFVWGQGESQLWWPGRIYDPSDASDVALKLKQKNRLLVAYFGHGAFAWCHPSQLKSFEDNFDDMLKQSSCIDFVNAVQDAAREVGRLLSMKLSRLVLDKKTGSESTLLLGKNSGIKEGVLVPETGIERLLYSQFEPVELLSHMNQIARIVDSGSSIMELEILKARLAAYYLSKGHKLPNFMDTQLAPGGEDSLTDETVAVENSRSTVEAPTQGPFDELGHSPGLPGNISNHVRKQKSIAEIMREDKDVHTASREVEATGSNGRRKRKGSEAGVRSKPVQKKKELLLDTDEDVSSAEHCAEENSGSIGSWLQSKEKKEVLDEGRKGSLSRERKKSKYLSPPFTTPIRGQREESIEAESLEVSRKVKASHTSSVAAVLQYPPVYMGRLFDSSNYQTEEDDGKKVIDPKKIQAPVEEVLFQVLNAAISPQIRREGTSLDQFVDFTFAFRSSLYSEGSLRDLYEKNQPGRKRKRPESEEEDGMLKDAQISSQKQNSGSKKKRKETASGKKGGDENAQGAVLVVSFWQGTSTPSRSELISVYSKFGALNEAETDVFNNNYTARVSFLRTSDAENALNHSKNNNPFGSADATFQLQYHSEGSKSEEHGERSKNKPLVAATSPSVSVSQGGEASRLIFIQKKLQGLTLILEASGDKSPDLMAELQREVKALLEDVNQMVEASLF* 1283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0142 1282 Gene3D - 592 696 - -
Pvu4g0142 1282 SUPERFAMILY Tudor/PWWP/MBT 598 709 - -
Pvu4g0142 1282 MobiDBLite consensus disorder prediction 244 348 - -
Pvu4g0142 1282 MobiDBLite consensus disorder prediction 801 835 - -
Pvu4g0142 1282 MobiDBLite consensus disorder prediction 147 170 - -
Pvu4g0142 1282 MobiDBLite consensus disorder prediction 801 815 - -
Pvu4g0142 1282 MobiDBLite consensus disorder prediction 1199 1221 - -
Pvu4g0142 1282 SMART PWWP_4 602 663 IPR000313 -
Pvu4g0142 1282 Pfam PWWP domain 605 687 IPR000313 -
Pvu4g0142 1282 MobiDBLite consensus disorder prediction 1 46 - -
Pvu4g0142 1282 MobiDBLite consensus disorder prediction 7 21 - -
Pvu4g0142 1282 MobiDBLite consensus disorder prediction 201 218 - -
Pvu4g0142 1282 Coils Coil 1259 1279 - -
Pvu4g0142 1282 MobiDBLite consensus disorder prediction 849 902 - -
Pvu4g0142 1282 MobiDBLite consensus disorder prediction 849 949 - -
Pvu4g0142 1282 MobiDBLite consensus disorder prediction 291 306 - -
Pvu4g0142 1282 CDD PWWP 602 688 - -
Pvu4g0142 1282 MobiDBLite consensus disorder prediction 1064 1087 - -
Pvu4g0142 1282 MobiDBLite consensus disorder prediction 918 941 - -
Pvu4g0142 1282 MobiDBLite consensus disorder prediction 1061 1115 - -
Pvu4g0142 1282 PANTHER ALDOLASE-RELATED 1 348 - -
Pvu4g0142 1282 PANTHER ALDOLASE-RELATED 401 1281 - -
Pvu4g0142 1282 ProSiteProfiles PWWP domain profile. 604 665 IPR000313 -
Pvu4g0142 1282 MobiDBLite consensus disorder prediction 250 282 - -
Pvu4g0142 1282 PANTHER PWWP DOMAIN PROTEIN 1 348 - -
Pvu4g0142 1282 PANTHER PWWP DOMAIN PROTEIN 401 1281 - -
Pvu4g0142 1282 MobiDBLite consensus disorder prediction 192 218 - -
Pvu4g0142 1282 MobiDBLite consensus disorder prediction 366 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0142 Pvu-Chr4 1213332 1217913 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0142 - - pvu:PHAVU_004G012100g 2379.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g0142 4 1213332 1217913 Pvu4g0142 4 1213332 1217913 ECH